miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8956 3' -58.9 NC_002512.2 + 45338 0.69 0.707837
Target:  5'- gGCCGUCCgccggcccgCGCCgCCGgcugacccCGCGACUGCUg -3'
miRNA:   3'- -UGGUAGGa--------GUGG-GGC--------GCGCUGAUGGu -5'
8956 3' -58.9 NC_002512.2 + 3123 0.69 0.707837
Target:  5'- -aCGUCCUCGCCCUcCGCGuCguccgGCCGg -3'
miRNA:   3'- ugGUAGGAGUGGGGcGCGCuGa----UGGU- -5'
8956 3' -58.9 NC_002512.2 + 28021 0.72 0.571779
Target:  5'- cGCCGUCCUCggaccgcagGCCCCaG-GCGAgCUGCCGg -3'
miRNA:   3'- -UGGUAGGAG---------UGGGG-CgCGCU-GAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 130816 0.72 0.571779
Target:  5'- uUCAUCCUCagccaccccaACCCCGCGguCGAgUACCGg -3'
miRNA:   3'- uGGUAGGAG----------UGGGGCGC--GCUgAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 116824 0.72 0.552557
Target:  5'- gACCG-CCUgGCCCuCGUGCGGCU-CCGa -3'
miRNA:   3'- -UGGUaGGAgUGGG-GCGCGCUGAuGGU- -5'
8956 3' -58.9 NC_002512.2 + 70901 0.73 0.50546
Target:  5'- cGCCG-CCUcCGCCCCGcCGUGGCcGCCGa -3'
miRNA:   3'- -UGGUaGGA-GUGGGGC-GCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 28159 0.74 0.469061
Target:  5'- aGCCGUCgUCuccCCCCGCGaCGACgacGCCGc -3'
miRNA:   3'- -UGGUAGgAGu--GGGGCGC-GCUGa--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 124092 0.74 0.469061
Target:  5'- cGCCGUCUUCGCCCuCGCcGuCGACcaUGCCGa -3'
miRNA:   3'- -UGGUAGGAGUGGG-GCG-C-GCUG--AUGGU- -5'
8956 3' -58.9 NC_002512.2 + 27742 0.74 0.425537
Target:  5'- gACCA-CC-CGCCCCGCGgCGGCgGCCGa -3'
miRNA:   3'- -UGGUaGGaGUGGGGCGC-GCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 39997 0.75 0.417124
Target:  5'- cGCCGUCCUCGCCgCCGC-CGuCUccGCCGu -3'
miRNA:   3'- -UGGUAGGAGUGG-GGCGcGCuGA--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 34872 0.72 0.571779
Target:  5'- cGCCGUCgUCGCCgCCGCcGgGACcGCCGu -3'
miRNA:   3'- -UGGUAGgAGUGG-GGCG-CgCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 49524 0.71 0.591155
Target:  5'- -gCAUCggCGCCCUGCGCGACUGgUAc -3'
miRNA:   3'- ugGUAGgaGUGGGGCGCGCUGAUgGU- -5'
8956 3' -58.9 NC_002512.2 + 106738 0.69 0.698254
Target:  5'- cGCC-UCCUCgGCCCCG-GCGGCgcuCCGc -3'
miRNA:   3'- -UGGuAGGAG-UGGGGCgCGCUGau-GGU- -5'
8956 3' -58.9 NC_002512.2 + 99179 0.7 0.666313
Target:  5'- cGCCAgucuggUCCUCGCCCUGauccuccagaucucCGCGGCcGCCGc -3'
miRNA:   3'- -UGGU------AGGAGUGGGGC--------------GCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 112375 0.7 0.659493
Target:  5'- uCCGUCCUCACCgCCgucaGCGCGAac-CCGg -3'
miRNA:   3'- uGGUAGGAGUGG-GG----CGCGCUgauGGU- -5'
8956 3' -58.9 NC_002512.2 + 9951 0.7 0.649734
Target:  5'- uCCAcCCUC-CCCCGCGCgucGACggagACCGa -3'
miRNA:   3'- uGGUaGGAGuGGGGCGCG---CUGa---UGGU- -5'
8956 3' -58.9 NC_002512.2 + 136854 0.7 0.639962
Target:  5'- aGCCGUCC-CGCCuCCGUGUGgaaccacaGCUGCCc -3'
miRNA:   3'- -UGGUAGGaGUGG-GGCGCGC--------UGAUGGu -5'
8956 3' -58.9 NC_002512.2 + 119182 0.71 0.620409
Target:  5'- cGCCAUgcagcuggcCCUgGCCCUGCGgCGGCUGCgCGa -3'
miRNA:   3'- -UGGUA---------GGAgUGGGGCGC-GCUGAUG-GU- -5'
8956 3' -58.9 NC_002512.2 + 77179 0.71 0.620409
Target:  5'- uGCCcgCCgCACCCCGaccggggaCGCGACgagACCGg -3'
miRNA:   3'- -UGGuaGGaGUGGGGC--------GCGCUGa--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 55533 0.71 0.620409
Target:  5'- gGCCAUCCgCAUCCCggcggacgaggGCGCGGCggACCc -3'
miRNA:   3'- -UGGUAGGaGUGGGG-----------CGCGCUGa-UGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.