miRNA display CGI


Results 21 - 40 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8956 3' -58.9 NC_002512.2 + 87965 0.67 0.847042
Target:  5'- uUUAUUCUCACCCCGUcggggccGCGGCgccCCGa -3'
miRNA:   3'- uGGUAGGAGUGGGGCG-------CGCUGau-GGU- -5'
8956 3' -58.9 NC_002512.2 + 218827 0.67 0.847805
Target:  5'- cGCCcUCCgcgGCCCUGCucuGCGACUucGCCGa -3'
miRNA:   3'- -UGGuAGGag-UGGGGCG---CGCUGA--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 155662 0.66 0.869822
Target:  5'- gGCCGU--UCGCCCCGCGuCGGg-ACCGc -3'
miRNA:   3'- -UGGUAggAGUGGGGCGC-GCUgaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 219167 0.66 0.883536
Target:  5'- cGCCGaggaCUUCGCCgCCGU-CGGCUACCGc -3'
miRNA:   3'- -UGGUa---GGAGUGG-GGCGcGCUGAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 106190 0.68 0.799126
Target:  5'- aACCGcugcgCCaaCGCCCCGcCGCGACggACCGc -3'
miRNA:   3'- -UGGUa----GGa-GUGGGGC-GCGCUGa-UGGU- -5'
8956 3' -58.9 NC_002512.2 + 196238 0.67 0.840101
Target:  5'- gACCcuGUCCgccgCGCCCgCGCGCGcCUcucGCCu -3'
miRNA:   3'- -UGG--UAGGa---GUGGG-GCGCGCuGA---UGGu -5'
8956 3' -58.9 NC_002512.2 + 121332 0.66 0.85533
Target:  5'- cACgGUgaCCUCGCUCCG-GCGGCgggGCCGu -3'
miRNA:   3'- -UGgUA--GGAGUGGGGCgCGCUGa--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 173504 0.66 0.883536
Target:  5'- cUCGaCCUCGCCCCGC-CGuCcGCCGa -3'
miRNA:   3'- uGGUaGGAGUGGGGCGcGCuGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 96486 0.67 0.840101
Target:  5'- gGCCGU-CUCGCCcuccaugguCCGgGCGACcGCCGg -3'
miRNA:   3'- -UGGUAgGAGUGG---------GGCgCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 140204 0.66 0.890089
Target:  5'- gACCGUacaUCUCGCCCCGC-CGcCUucgcACCGc -3'
miRNA:   3'- -UGGUA---GGAGUGGGGCGcGCuGA----UGGU- -5'
8956 3' -58.9 NC_002512.2 + 226649 0.67 0.847805
Target:  5'- gACCGUCgUCACCCgaCGCGcCGGgU-CCAg -3'
miRNA:   3'- -UGGUAGgAGUGGG--GCGC-GCUgAuGGU- -5'
8956 3' -58.9 NC_002512.2 + 147488 0.67 0.840101
Target:  5'- cACCGg-CUC-CCCCGCGCG-CggaGCCAc -3'
miRNA:   3'- -UGGUagGAGuGGGGCGCGCuGa--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 166072 0.66 0.85533
Target:  5'- cACCGUCgUCcuggacauguACCCCGUGUG-CUccGCCAa -3'
miRNA:   3'- -UGGUAGgAG----------UGGGGCGCGCuGA--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 113193 0.66 0.869822
Target:  5'- cGCCGUCC--GCUCCGCgaGCGGgaGCCGg -3'
miRNA:   3'- -UGGUAGGagUGGGGCG--CGCUgaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 143210 0.66 0.876779
Target:  5'- uGCCGUCC-C-CCUCGCGCgccguccgcucgGACgcgGCCAc -3'
miRNA:   3'- -UGGUAGGaGuGGGGCGCG------------CUGa--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 178684 0.66 0.883536
Target:  5'- gACaCGUCCgagGCCCgcaGCGCGGCcGCCGc -3'
miRNA:   3'- -UG-GUAGGag-UGGGg--CGCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 211015 0.68 0.781721
Target:  5'- uCCAUCCUCuucagcuacgACCaCUGCGCGgccgucccccGCUACCu -3'
miRNA:   3'- uGGUAGGAG----------UGG-GGCGCGC----------UGAUGGu -5'
8956 3' -58.9 NC_002512.2 + 46030 0.68 0.799126
Target:  5'- cGCUgaAUCCUUugCUCGCGCGACguuCUu -3'
miRNA:   3'- -UGG--UAGGAGugGGGCGCGCUGau-GGu -5'
8956 3' -58.9 NC_002512.2 + 138963 0.67 0.824182
Target:  5'- gGCCGcgCCg-GCCCCGUucGCGGCcGCCAg -3'
miRNA:   3'- -UGGUa-GGagUGGGGCG--CGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 182332 0.67 0.840101
Target:  5'- aGCUcgCCUCccgcguguACUCCGCGCccGGCUGCUg -3'
miRNA:   3'- -UGGuaGGAG--------UGGGGCGCG--CUGAUGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.