miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8956 3' -58.9 NC_002512.2 + 135165 0.66 0.890089
Target:  5'- gGCCAgcgaacgCCUgCGCCCCGCGC----ACCGc -3'
miRNA:   3'- -UGGUa------GGA-GUGGGGCGCGcugaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 94371 0.67 0.832224
Target:  5'- gGCCAUCCUCAggaCGUGCGug-GCCAu -3'
miRNA:   3'- -UGGUAGGAGUgggGCGCGCugaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 71726 0.67 0.840101
Target:  5'- gACCgAUCCUCccaucaguaccGCUCC-CGCGACUACgGg -3'
miRNA:   3'- -UGG-UAGGAG-----------UGGGGcGCGCUGAUGgU- -5'
8956 3' -58.9 NC_002512.2 + 108052 0.67 0.847805
Target:  5'- cGCCGUCCUCccCCCCGUcCGGCcgACg- -3'
miRNA:   3'- -UGGUAGGAGu-GGGGCGcGCUGa-UGgu -5'
8956 3' -58.9 NC_002512.2 + 169093 0.66 0.862671
Target:  5'- gGCCcgcGUCCUCGuCCUCGCGgGGCguucgguCCGg -3'
miRNA:   3'- -UGG---UAGGAGU-GGGGCGCgCUGau-----GGU- -5'
8956 3' -58.9 NC_002512.2 + 225449 0.68 0.790488
Target:  5'- cCCGcgCCcggCACCCCGC-CGGuCUACCAg -3'
miRNA:   3'- uGGUa-GGa--GUGGGGCGcGCU-GAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 186824 0.67 0.807625
Target:  5'- gACCGgugCCUCggcgagGCCCUGCGCGuc-GCCGa -3'
miRNA:   3'- -UGGUa--GGAG------UGGGGCGCGCugaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 172260 0.66 0.876092
Target:  5'- uGCUcgCCUCACgCCCGCuCGGucgcccgggacauCUGCCGu -3'
miRNA:   3'- -UGGuaGGAGUG-GGGCGcGCU-------------GAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 195884 0.67 0.840101
Target:  5'- uCCGUCgUCaggaaggaGCCCUGCGUGGggGCCAa -3'
miRNA:   3'- uGGUAGgAG--------UGGGGCGCGCUgaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 87965 0.67 0.847042
Target:  5'- uUUAUUCUCACCCCGUcggggccGCGGCgccCCGa -3'
miRNA:   3'- uGGUAGGAGUGGGGCG-------CGCUGau-GGU- -5'
8956 3' -58.9 NC_002512.2 + 221500 0.66 0.876779
Target:  5'- -gCGUCCUauuuUCCUGCGCGGC-GCCGc -3'
miRNA:   3'- ugGUAGGAgu--GGGGCGCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 167700 0.66 0.883536
Target:  5'- aACCuaCCUCACCUgGCG-GuCUACCGg -3'
miRNA:   3'- -UGGuaGGAGUGGGgCGCgCuGAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 146281 0.68 0.772831
Target:  5'- cGCCguGUCCa-ACCCCG-GCGACUGCUu -3'
miRNA:   3'- -UGG--UAGGagUGGGGCgCGCUGAUGGu -5'
8956 3' -58.9 NC_002512.2 + 107972 0.68 0.790488
Target:  5'- cGCCG-CCUCGucccgcucgcuCCCCGCGCGuc-GCCGa -3'
miRNA:   3'- -UGGUaGGAGU-----------GGGGCGCGCugaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 182332 0.67 0.840101
Target:  5'- aGCUcgCCUCccgcguguACUCCGCGCccGGCUGCUg -3'
miRNA:   3'- -UGGuaGGAG--------UGGGGCGCG--CUGAUGGu -5'
8956 3' -58.9 NC_002512.2 + 172553 0.66 0.85533
Target:  5'- gGCCAg-CUCcCCCUGCGUGACguuCCu -3'
miRNA:   3'- -UGGUagGAGuGGGGCGCGCUGau-GGu -5'
8956 3' -58.9 NC_002512.2 + 181083 0.66 0.862671
Target:  5'- cGCgAUCCUCuCCCUGUgccGCGACgcCCGc -3'
miRNA:   3'- -UGgUAGGAGuGGGGCG---CGCUGauGGU- -5'
8956 3' -58.9 NC_002512.2 + 178684 0.66 0.883536
Target:  5'- gACaCGUCCgagGCCCgcaGCGCGGCcGCCGc -3'
miRNA:   3'- -UG-GUAGGag-UGGGg--CGCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 132528 0.67 0.847805
Target:  5'- cGCgGUCCcCGCUCCGCggGCGGC-GCCGu -3'
miRNA:   3'- -UGgUAGGaGUGGGGCG--CGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 115009 0.67 0.840101
Target:  5'- cACCuUCCUCcagACCCUGCuGCGGCacgcgGCCc -3'
miRNA:   3'- -UGGuAGGAG---UGGGGCG-CGCUGa----UGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.