miRNA display CGI


Results 41 - 60 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8956 3' -58.9 NC_002512.2 + 180899 0.67 0.80509
Target:  5'- gGCCGUCUUCcaGCUCCGCGUucuccgccacgaucGACU-CCAg -3'
miRNA:   3'- -UGGUAGGAG--UGGGGCGCG--------------CUGAuGGU- -5'
8956 3' -58.9 NC_002512.2 + 121332 0.66 0.85533
Target:  5'- cACgGUgaCCUCGCUCCG-GCGGCgggGCCGu -3'
miRNA:   3'- -UGgUA--GGAGUGGGGCgCGCUGa--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 173504 0.66 0.883536
Target:  5'- cUCGaCCUCGCCCCGC-CGuCcGCCGa -3'
miRNA:   3'- uGGUaGGAGUGGGGCGcGCuGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 186824 0.67 0.807625
Target:  5'- gACCGgugCCUCggcgagGCCCUGCGCGuc-GCCGa -3'
miRNA:   3'- -UGGUa--GGAG------UGGGGCGCGCugaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 140204 0.66 0.890089
Target:  5'- gACCGUacaUCUCGCCCCGC-CGcCUucgcACCGc -3'
miRNA:   3'- -UGGUA---GGAGUGGGGCGcGCuGA----UGGU- -5'
8956 3' -58.9 NC_002512.2 + 126722 0.71 0.620409
Target:  5'- cUCGUCCUCGCCggGCGCGGCgcgUGCCu -3'
miRNA:   3'- uGGUAGGAGUGGggCGCGCUG---AUGGu -5'
8956 3' -58.9 NC_002512.2 + 178684 0.66 0.883536
Target:  5'- gACaCGUCCgagGCCCgcaGCGCGGCcGCCGc -3'
miRNA:   3'- -UG-GUAGGag-UGGGg--CGCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 3370 0.7 0.678944
Target:  5'- gACCGUCCgccCGCUCCGCGgGGC--CCAc -3'
miRNA:   3'- -UGGUAGGa--GUGGGGCGCgCUGauGGU- -5'
8956 3' -58.9 NC_002512.2 + 109099 0.69 0.698254
Target:  5'- cGCCGUCCcgcCGCCCC-CGCcGACgGCCGc -3'
miRNA:   3'- -UGGUAGGa--GUGGGGcGCG-CUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 173704 0.69 0.736203
Target:  5'- cGCCGUCCUgggaCugCCCGCGaccgugcuCGGCaACCAc -3'
miRNA:   3'- -UGGUAGGA----GugGGGCGC--------GCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 121546 0.68 0.763826
Target:  5'- uCCGUCCgcgCAUgCCGCGcCGACcGCCc -3'
miRNA:   3'- uGGUAGGa--GUGgGGCGC-GCUGaUGGu -5'
8956 3' -58.9 NC_002512.2 + 211015 0.68 0.781721
Target:  5'- uCCAUCCUCuucagcuacgACCaCUGCGCGgccgucccccGCUACCu -3'
miRNA:   3'- uGGUAGGAG----------UGG-GGCGCGC----------UGAUGGu -5'
8956 3' -58.9 NC_002512.2 + 46030 0.68 0.799126
Target:  5'- cGCUgaAUCCUUugCUCGCGCGACguuCUu -3'
miRNA:   3'- -UGG--UAGGAGugGGGCGCGCUGau-GGu -5'
8956 3' -58.9 NC_002512.2 + 71726 0.67 0.840101
Target:  5'- gACCgAUCCUCccaucaguaccGCUCC-CGCGACUACgGg -3'
miRNA:   3'- -UGG-UAGGAG-----------UGGGGcGCGCUGAUGgU- -5'
8956 3' -58.9 NC_002512.2 + 96486 0.67 0.840101
Target:  5'- gGCCGU-CUCGCCcuccaugguCCGgGCGACcGCCGg -3'
miRNA:   3'- -UGGUAgGAGUGG---------GGCgCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 87965 0.67 0.847042
Target:  5'- uUUAUUCUCACCCCGUcggggccGCGGCgccCCGa -3'
miRNA:   3'- uGGUAGGAGUGGGGCG-------CGCUGau-GGU- -5'
8956 3' -58.9 NC_002512.2 + 218827 0.67 0.847805
Target:  5'- cGCCcUCCgcgGCCCUGCucuGCGACUucGCCGa -3'
miRNA:   3'- -UGGuAGGag-UGGGGCG---CGCUGA--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 166072 0.66 0.85533
Target:  5'- cACCGUCgUCcuggacauguACCCCGUGUG-CUccGCCAa -3'
miRNA:   3'- -UGGUAGgAG----------UGGGGCGCGCuGA--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 113193 0.66 0.869822
Target:  5'- cGCCGUCC--GCUCCGCgaGCGGgaGCCGg -3'
miRNA:   3'- -UGGUAGGagUGGGGCG--CGCUgaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 143210 0.66 0.876779
Target:  5'- uGCCGUCC-C-CCUCGCGCgccguccgcucgGACgcgGCCAc -3'
miRNA:   3'- -UGGUAGGaGuGGGGCGCG------------CUGa--UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.