miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8956 3' -58.9 NC_002512.2 + 135165 0.66 0.890089
Target:  5'- gGCCAgcgaacgCCUgCGCCCCGCGC----ACCGc -3'
miRNA:   3'- -UGGUa------GGA-GUGGGGCGCGcugaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 121332 0.66 0.85533
Target:  5'- cACgGUgaCCUCGCUCCG-GCGGCgggGCCGu -3'
miRNA:   3'- -UGgUA--GGAGUGGGGCgCGCUGa--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 218827 0.67 0.847805
Target:  5'- cGCCcUCCgcgGCCCUGCucuGCGACUucGCCGa -3'
miRNA:   3'- -UGGuAGGag-UGGGGCG---CGCUGA--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 213113 1.08 0.002945
Target:  5'- cACCAUCCUCACCCCGCGCGACUACCAg -3'
miRNA:   3'- -UGGUAGGAGUGGGGCGCGCUGAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 178684 0.66 0.883536
Target:  5'- gACaCGUCCgagGCCCgcaGCGCGGCcGCCGc -3'
miRNA:   3'- -UG-GUAGGag-UGGGg--CGCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 167700 0.66 0.883536
Target:  5'- aACCuaCCUCACCUgGCG-GuCUACCGg -3'
miRNA:   3'- -UGGuaGGAGUGGGgCGCgCuGAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 143210 0.66 0.876779
Target:  5'- uGCCGUCC-C-CCUCGCGCgccguccgcucgGACgcgGCCAc -3'
miRNA:   3'- -UGGUAGGaGuGGGGCGCG------------CUGa--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 172260 0.66 0.876092
Target:  5'- uGCUcgCCUCACgCCCGCuCGGucgcccgggacauCUGCCGu -3'
miRNA:   3'- -UGGuaGGAGUG-GGGCGcGCU-------------GAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 113193 0.66 0.869822
Target:  5'- cGCCGUCC--GCUCCGCgaGCGGgaGCCGg -3'
miRNA:   3'- -UGGUAGGagUGGGGCG--CGCUgaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 158165 0.66 0.85533
Target:  5'- cACCAUCCagGCCCuCGggaCGCGGCUcguggugcagaACCGc -3'
miRNA:   3'- -UGGUAGGagUGGG-GC---GCGCUGA-----------UGGU- -5'
8956 3' -58.9 NC_002512.2 + 181083 0.66 0.862671
Target:  5'- cGCgAUCCUCuCCCUGUgccGCGACgcCCGc -3'
miRNA:   3'- -UGgUAGGAGuGGGGCG---CGCUGauGGU- -5'
8956 3' -58.9 NC_002512.2 + 155662 0.66 0.869822
Target:  5'- gGCCGU--UCGCCCCGCGuCGGg-ACCGc -3'
miRNA:   3'- -UGGUAggAGUGGGGCGC-GCUgaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 140204 0.66 0.890089
Target:  5'- gACCGUacaUCUCGCCCCGC-CGcCUucgcACCGc -3'
miRNA:   3'- -UGGUA---GGAGUGGGGCGcGCuGA----UGGU- -5'
8956 3' -58.9 NC_002512.2 + 166072 0.66 0.85533
Target:  5'- cACCGUCgUCcuggacauguACCCCGUGUG-CUccGCCAa -3'
miRNA:   3'- -UGGUAGgAG----------UGGGGCGCGCuGA--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 173504 0.66 0.883536
Target:  5'- cUCGaCCUCGCCCCGC-CGuCcGCCGa -3'
miRNA:   3'- uGGUaGGAGUGGGGCGcGCuGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 166654 0.66 0.869822
Target:  5'- gGCCA-CCguguugCGCCCgaGUGCGGgUACCAc -3'
miRNA:   3'- -UGGUaGGa-----GUGGGg-CGCGCUgAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 172553 0.66 0.85533
Target:  5'- gGCCAg-CUCcCCCUGCGUGACguuCCu -3'
miRNA:   3'- -UGGUagGAGuGGGGCGCGCUGau-GGu -5'
8956 3' -58.9 NC_002512.2 + 226649 0.67 0.847805
Target:  5'- gACCGUCgUCACCCgaCGCGcCGGgU-CCAg -3'
miRNA:   3'- -UGGUAGgAGUGGG--GCGC-GCUgAuGGU- -5'
8956 3' -58.9 NC_002512.2 + 219167 0.66 0.883536
Target:  5'- cGCCGaggaCUUCGCCgCCGU-CGGCUACCGc -3'
miRNA:   3'- -UGGUa---GGAGUGG-GGCGcGCUGAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 221500 0.66 0.876779
Target:  5'- -gCGUCCUauuuUCCUGCGCGGC-GCCGc -3'
miRNA:   3'- ugGUAGGAgu--GGGGCGCGCUGaUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.