miRNA display CGI


Results 61 - 80 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8956 3' -58.9 NC_002512.2 + 104680 0.66 0.869822
Target:  5'- gGCguUCCUC-CUCCGCGUccugGACgGCCAc -3'
miRNA:   3'- -UGguAGGAGuGGGGCGCG----CUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 106190 0.68 0.799126
Target:  5'- aACCGcugcgCCaaCGCCCCGcCGCGACggACCGc -3'
miRNA:   3'- -UGGUa----GGa-GUGGGGC-GCGCUGa-UGGU- -5'
8956 3' -58.9 NC_002512.2 + 106738 0.69 0.698254
Target:  5'- cGCC-UCCUCgGCCCCG-GCGGCgcuCCGc -3'
miRNA:   3'- -UGGuAGGAG-UGGGGCgCGCUGau-GGU- -5'
8956 3' -58.9 NC_002512.2 + 107972 0.68 0.790488
Target:  5'- cGCCG-CCUCGucccgcucgcuCCCCGCGCGuc-GCCGa -3'
miRNA:   3'- -UGGUaGGAGU-----------GGGGCGCGCugaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 108052 0.67 0.847805
Target:  5'- cGCCGUCCUCccCCCCGUcCGGCcgACg- -3'
miRNA:   3'- -UGGUAGGAGu-GGGGCGcGCUGa-UGgu -5'
8956 3' -58.9 NC_002512.2 + 108068 0.66 0.85533
Target:  5'- gUCA-CC-CGCCCCGUGCGuGCUGuCCAc -3'
miRNA:   3'- uGGUaGGaGUGGGGCGCGC-UGAU-GGU- -5'
8956 3' -58.9 NC_002512.2 + 109099 0.69 0.698254
Target:  5'- cGCCGUCCcgcCGCCCC-CGCcGACgGCCGc -3'
miRNA:   3'- -UGGUAGGa--GUGGGGcGCG-CUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 110546 0.68 0.790488
Target:  5'- gACCGgcguuUCCgC-CCCCGCGCGGgaggucCUGCCGg -3'
miRNA:   3'- -UGGU-----AGGaGuGGGGCGCGCU------GAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 111395 0.69 0.72682
Target:  5'- aGCCGUCC-CGCCCCG-GCaGCUcggcGCCGu -3'
miRNA:   3'- -UGGUAGGaGUGGGGCgCGcUGA----UGGU- -5'
8956 3' -58.9 NC_002512.2 + 112375 0.7 0.659493
Target:  5'- uCCGUCCUCACCgCCgucaGCGCGAac-CCGg -3'
miRNA:   3'- uGGUAGGAGUGG-GG----CGCGCUgauGGU- -5'
8956 3' -58.9 NC_002512.2 + 113193 0.66 0.869822
Target:  5'- cGCCGUCC--GCUCCGCgaGCGGgaGCCGg -3'
miRNA:   3'- -UGGUAGGagUGGGGCG--CGCUgaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 114011 0.69 0.72682
Target:  5'- cGCCGUCg--GCCCCGCaGCGGC-ACCGg -3'
miRNA:   3'- -UGGUAGgagUGGGGCG-CGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 115009 0.67 0.840101
Target:  5'- cACCuUCCUCcagACCCUGCuGCGGCacgcgGCCc -3'
miRNA:   3'- -UGGuAGGAG---UGGGGCG-CGCUGa----UGGu -5'
8956 3' -58.9 NC_002512.2 + 116727 0.69 0.745504
Target:  5'- -gCGUCC-CGCCCgGcCGCGGCgagGCCGg -3'
miRNA:   3'- ugGUAGGaGUGGGgC-GCGCUGa--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 116824 0.72 0.552557
Target:  5'- gACCG-CCUgGCCCuCGUGCGGCU-CCGa -3'
miRNA:   3'- -UGGUaGGAgUGGG-GCGCGCUGAuGGU- -5'
8956 3' -58.9 NC_002512.2 + 119182 0.71 0.620409
Target:  5'- cGCCAUgcagcuggcCCUgGCCCUGCGgCGGCUGCgCGa -3'
miRNA:   3'- -UGGUA---------GGAgUGGGGCGC-GCUGAUG-GU- -5'
8956 3' -58.9 NC_002512.2 + 119620 0.69 0.707837
Target:  5'- cGCUcgCCUCccGCCCCaGCGCGGCgcuuuauaaGCCGa -3'
miRNA:   3'- -UGGuaGGAG--UGGGG-CGCGCUGa--------UGGU- -5'
8956 3' -58.9 NC_002512.2 + 120722 0.76 0.346191
Target:  5'- uUCAUCCcgGCCCCGCGCGagaacgugaGCUGCCAg -3'
miRNA:   3'- uGGUAGGagUGGGGCGCGC---------UGAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 121125 0.68 0.763826
Target:  5'- gACCAgCCggaUCGCCCgCGcCGCGcACUGCCu -3'
miRNA:   3'- -UGGUaGG---AGUGGG-GC-GCGC-UGAUGGu -5'
8956 3' -58.9 NC_002512.2 + 121332 0.66 0.85533
Target:  5'- cACgGUgaCCUCGCUCCG-GCGGCgggGCCGu -3'
miRNA:   3'- -UGgUA--GGAGUGGGGCgCGCUGa--UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.