miRNA display CGI


Results 61 - 80 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8956 3' -58.9 NC_002512.2 + 99741 0.68 0.772831
Target:  5'- cGCCG-CCggGCCCCGCggccGCGAC-ACCAc -3'
miRNA:   3'- -UGGUaGGagUGGGGCG----CGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 146281 0.68 0.772831
Target:  5'- cGCCguGUCCa-ACCCCG-GCGACUGCUu -3'
miRNA:   3'- -UGG--UAGGagUGGGGCgCGCUGAUGGu -5'
8956 3' -58.9 NC_002512.2 + 211015 0.68 0.781721
Target:  5'- uCCAUCCUCuucagcuacgACCaCUGCGCGgccgucccccGCUACCu -3'
miRNA:   3'- uGGUAGGAG----------UGG-GGCGCGC----------UGAUGGu -5'
8956 3' -58.9 NC_002512.2 + 7297 0.68 0.781721
Target:  5'- gGCCGgacaggCCUC-CUCCGCGaCGGCggGCCGc -3'
miRNA:   3'- -UGGUa-----GGAGuGGGGCGC-GCUGa-UGGU- -5'
8956 3' -58.9 NC_002512.2 + 53354 0.68 0.781721
Target:  5'- gACCAcCCUC-CCCUaCGUGACgGCCAa -3'
miRNA:   3'- -UGGUaGGAGuGGGGcGCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 110546 0.68 0.790488
Target:  5'- gACCGgcguuUCCgC-CCCCGCGCGGgaggucCUGCCGg -3'
miRNA:   3'- -UGGU-----AGGaGuGGGGCGCGCU------GAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 225449 0.68 0.790488
Target:  5'- cCCGcgCCcggCACCCCGC-CGGuCUACCAg -3'
miRNA:   3'- uGGUa-GGa--GUGGGGCGcGCU-GAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 107972 0.68 0.790488
Target:  5'- cGCCG-CCUCGucccgcucgcuCCCCGCGCGuc-GCCGa -3'
miRNA:   3'- -UGGUaGGAGU-----------GGGGCGCGCugaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 6171 0.68 0.799126
Target:  5'- gUCGUCCU--CCCCGUGCGAgUcGCCGg -3'
miRNA:   3'- uGGUAGGAguGGGGCGCGCUgA-UGGU- -5'
8956 3' -58.9 NC_002512.2 + 106190 0.68 0.799126
Target:  5'- aACCGcugcgCCaaCGCCCCGcCGCGACggACCGc -3'
miRNA:   3'- -UGGUa----GGa-GUGGGGC-GCGCUGa-UGGU- -5'
8956 3' -58.9 NC_002512.2 + 86324 0.68 0.799126
Target:  5'- cGCCggCC-CGCCCgcggggagaCGCGCGGCcGCCGa -3'
miRNA:   3'- -UGGuaGGaGUGGG---------GCGCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 46030 0.68 0.799126
Target:  5'- cGCUgaAUCCUUugCUCGCGCGACguuCUu -3'
miRNA:   3'- -UGG--UAGGAGugGGGCGCGCUGau-GGu -5'
8956 3' -58.9 NC_002512.2 + 180899 0.67 0.80509
Target:  5'- gGCCGUCUUCcaGCUCCGCGUucuccgccacgaucGACU-CCAg -3'
miRNA:   3'- -UGGUAGGAG--UGGGGCGCG--------------CUGAuGGU- -5'
8956 3' -58.9 NC_002512.2 + 186824 0.67 0.807625
Target:  5'- gACCGgugCCUCggcgagGCCCUGCGCGuc-GCCGa -3'
miRNA:   3'- -UGGUa--GGAG------UGGGGCGCGCugaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 39355 0.67 0.82092
Target:  5'- aGCCGgucCCUCGCCCCGaccagcucgucgaGgGAgUGCCGg -3'
miRNA:   3'- -UGGUa--GGAGUGGGGCg------------CgCUgAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 138963 0.67 0.824182
Target:  5'- gGCCGcgCCg-GCCCCGUucGCGGCcGCCAg -3'
miRNA:   3'- -UGGUa-GGagUGGGGCG--CGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 68954 0.67 0.832224
Target:  5'- gACCccCC-CACCgCCGCaGCGACUGuCCGc -3'
miRNA:   3'- -UGGuaGGaGUGG-GGCG-CGCUGAU-GGU- -5'
8956 3' -58.9 NC_002512.2 + 43170 0.67 0.832224
Target:  5'- gGCCGacUCCUCGCccaaCCCGCcGCaGACgaagGCCGa -3'
miRNA:   3'- -UGGU--AGGAGUG----GGGCG-CG-CUGa---UGGU- -5'
8956 3' -58.9 NC_002512.2 + 91773 0.67 0.832224
Target:  5'- uCCGcCUUCACCCCcagggccagcGUGCGGCUGCg- -3'
miRNA:   3'- uGGUaGGAGUGGGG----------CGCGCUGAUGgu -5'
8956 3' -58.9 NC_002512.2 + 37066 0.67 0.832224
Target:  5'- uCCA-CCUgGCCCCgGUGCGAUcGCCc -3'
miRNA:   3'- uGGUaGGAgUGGGG-CGCGCUGaUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.