miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8956 3' -58.9 NC_002512.2 + 104680 0.66 0.869822
Target:  5'- gGCguUCCUC-CUCCGCGUccugGACgGCCAc -3'
miRNA:   3'- -UGguAGGAGuGGGGCGCG----CUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 135251 0.66 0.869822
Target:  5'- gGCCGUCgUcCGCgCCGCGCucGACgagGCCu -3'
miRNA:   3'- -UGGUAGgA-GUGgGGCGCG--CUGa--UGGu -5'
8956 3' -58.9 NC_002512.2 + 22887 0.66 0.869822
Target:  5'- cACCAUgCUgACCCCGCG-GGCcACgGg -3'
miRNA:   3'- -UGGUAgGAgUGGGGCGCgCUGaUGgU- -5'
8956 3' -58.9 NC_002512.2 + 169093 0.66 0.862671
Target:  5'- gGCCcgcGUCCUCGuCCUCGCGgGGCguucgguCCGg -3'
miRNA:   3'- -UGG---UAGGAGU-GGGGCGCgCUGau-----GGU- -5'
8956 3' -58.9 NC_002512.2 + 181083 0.66 0.862671
Target:  5'- cGCgAUCCUCuCCCUGUgccGCGACgcCCGc -3'
miRNA:   3'- -UGgUAGGAGuGGGGCG---CGCUGauGGU- -5'
8956 3' -58.9 NC_002512.2 + 2982 0.66 0.862671
Target:  5'- gGCC-UCCUUggcCCCCGCGUGGC--CCGg -3'
miRNA:   3'- -UGGuAGGAGu--GGGGCGCGCUGauGGU- -5'
8956 3' -58.9 NC_002512.2 + 136162 0.66 0.862671
Target:  5'- cCCGUCCccgUCGauCCgCCGCGCGGCggggucGCCGg -3'
miRNA:   3'- uGGUAGG---AGU--GG-GGCGCGCUGa-----UGGU- -5'
8956 3' -58.9 NC_002512.2 + 22701 0.66 0.862671
Target:  5'- gACCAacgCgUCGCCCCG-GCGgcacaucaacaGCUACCGc -3'
miRNA:   3'- -UGGUa--GgAGUGGGGCgCGC-----------UGAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 8616 0.66 0.862671
Target:  5'- cCCcUCCacgCGCCCCGCGUcccccGACUuccGCCGc -3'
miRNA:   3'- uGGuAGGa--GUGGGGCGCG-----CUGA---UGGU- -5'
8956 3' -58.9 NC_002512.2 + 158165 0.66 0.85533
Target:  5'- cACCAUCCagGCCCuCGggaCGCGGCUcguggugcagaACCGc -3'
miRNA:   3'- -UGGUAGGagUGGG-GC---GCGCUGA-----------UGGU- -5'
8956 3' -58.9 NC_002512.2 + 172553 0.66 0.85533
Target:  5'- gGCCAg-CUCcCCCUGCGUGACguuCCu -3'
miRNA:   3'- -UGGUagGAGuGGGGCGCGCUGau-GGu -5'
8956 3' -58.9 NC_002512.2 + 166072 0.66 0.85533
Target:  5'- cACCGUCgUCcuggacauguACCCCGUGUG-CUccGCCAa -3'
miRNA:   3'- -UGGUAGgAG----------UGGGGCGCGCuGA--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 108068 0.66 0.85533
Target:  5'- gUCA-CC-CGCCCCGUGCGuGCUGuCCAc -3'
miRNA:   3'- uGGUaGGaGUGGGGCGCGC-UGAU-GGU- -5'
8956 3' -58.9 NC_002512.2 + 10068 0.66 0.85533
Target:  5'- gACCGaCCcccugucgCGCCCCGCGCGucccCUAUCu -3'
miRNA:   3'- -UGGUaGGa-------GUGGGGCGCGCu---GAUGGu -5'
8956 3' -58.9 NC_002512.2 + 50581 0.66 0.85533
Target:  5'- uGCCcgCCUCGCcgCCCGCG-GACUGg-- -3'
miRNA:   3'- -UGGuaGGAGUG--GGGCGCgCUGAUggu -5'
8956 3' -58.9 NC_002512.2 + 121332 0.66 0.85533
Target:  5'- cACgGUgaCCUCGCUCCG-GCGGCgggGCCGu -3'
miRNA:   3'- -UGgUA--GGAGUGGGGCgCGCUGa--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 226649 0.67 0.847805
Target:  5'- gACCGUCgUCACCCgaCGCGcCGGgU-CCAg -3'
miRNA:   3'- -UGGUAGgAGUGGG--GCGC-GCUgAuGGU- -5'
8956 3' -58.9 NC_002512.2 + 218827 0.67 0.847805
Target:  5'- cGCCcUCCgcgGCCCUGCucuGCGACUucGCCGa -3'
miRNA:   3'- -UGGuAGGag-UGGGGCG---CGCUGA--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 123113 0.67 0.847805
Target:  5'- aACCGUCC-CGCCgCCGU-CGGCgGCCGu -3'
miRNA:   3'- -UGGUAGGaGUGG-GGCGcGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 108052 0.67 0.847805
Target:  5'- cGCCGUCCUCccCCCCGUcCGGCcgACg- -3'
miRNA:   3'- -UGGUAGGAGu-GGGGCGcGCUGa-UGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.