miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8957 3' -54.9 NC_002512.2 + 83814 0.66 0.974006
Target:  5'- gCGCGCcgGCggCGGCGgcuccGGGcccGGGUCGUCg -3'
miRNA:   3'- aGUGCGa-CGa-GCUGC-----UCC---UCUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 85286 0.7 0.865606
Target:  5'- -gGCGCggacCUCGuGCGAGGGGAUCGa- -3'
miRNA:   3'- agUGCGac--GAGC-UGCUCCUCUAGCag -5'
8957 3' -54.9 NC_002512.2 + 87411 0.76 0.539314
Target:  5'- -gGC-CUGacaUCGugGGGGAGAUCGUCa -3'
miRNA:   3'- agUGcGACg--AGCugCUCCUCUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 88611 0.67 0.950671
Target:  5'- gCGCGCgGC-CGGCGucGGGAcgaacguGGUCGUCg -3'
miRNA:   3'- aGUGCGaCGaGCUGC--UCCU-------CUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 89110 0.69 0.893278
Target:  5'- gCGCGuCUGgUCGGCGGucguuuGGAGggCGUCu -3'
miRNA:   3'- aGUGC-GACgAGCUGCU------CCUCuaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 89771 0.66 0.971333
Target:  5'- gCGCGCggGCaUCuGAcauCGGGGAGAgcgUCGUCg -3'
miRNA:   3'- aGUGCGa-CG-AG-CU---GCUCCUCU---AGCAG- -5'
8957 3' -54.9 NC_002512.2 + 90312 0.67 0.965405
Target:  5'- gCGCGgaGCUgagCGccuGCGAGGAGAUCa-- -3'
miRNA:   3'- aGUGCgaCGA---GC---UGCUCCUCUAGcag -5'
8957 3' -54.9 NC_002512.2 + 97497 0.73 0.736815
Target:  5'- aUCACGUUcGUccacgacuUCcGCGGGGAGGUCGUCg -3'
miRNA:   3'- -AGUGCGA-CG--------AGcUGCUCCUCUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 100276 0.75 0.638376
Target:  5'- -gACGgaGCUCGGCGAGcGGGGcgaguUCGUCg -3'
miRNA:   3'- agUGCgaCGAGCUGCUC-CUCU-----AGCAG- -5'
8957 3' -54.9 NC_002512.2 + 106644 0.69 0.893278
Target:  5'- -gGCGCcgGCUCGGCGAGuaguccuccGAGAUguagCGUCg -3'
miRNA:   3'- agUGCGa-CGAGCUGCUC---------CUCUA----GCAG- -5'
8957 3' -54.9 NC_002512.2 + 106690 0.66 0.968468
Target:  5'- gUCGCGgUGUUCGGCGAuGGGGcUC-UCc -3'
miRNA:   3'- -AGUGCgACGAGCUGCU-CCUCuAGcAG- -5'
8957 3' -54.9 NC_002512.2 + 108811 0.66 0.970494
Target:  5'- -gGCGCUGUUCcGCGAGGcgugcgagguguacGGAgCGUCc -3'
miRNA:   3'- agUGCGACGAGcUGCUCC--------------UCUaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 112496 0.69 0.886678
Target:  5'- gCGCGCaGCcCGACGAGuAGAUCGa- -3'
miRNA:   3'- aGUGCGaCGaGCUGCUCcUCUAGCag -5'
8957 3' -54.9 NC_002512.2 + 115031 0.67 0.954977
Target:  5'- cCGCGCUcaGCUCGA--AGGGGAUgGUg -3'
miRNA:   3'- aGUGCGA--CGAGCUgcUCCUCUAgCAg -5'
8957 3' -54.9 NC_002512.2 + 119067 0.73 0.743479
Target:  5'- aUCGCGCUGCugucccucgaccggUCGcGCGAGGAGGUgCGg- -3'
miRNA:   3'- -AGUGCGACG--------------AGC-UGCUCCUCUA-GCag -5'
8957 3' -54.9 NC_002512.2 + 123018 0.83 0.235443
Target:  5'- ---gGCUGCUcgugcgCGACGAGGAGGUCGUCg -3'
miRNA:   3'- agugCGACGA------GCUGCUCCUCUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 124949 0.69 0.893278
Target:  5'- cCGCGCcgacGC-CgGACGAGGAGGcCGUCg -3'
miRNA:   3'- aGUGCGa---CGaG-CUGCUCCUCUaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 128367 0.78 0.473095
Target:  5'- gUCGCGCggugcccccugUGCUaCGACGGGGAGAgcgacUCGUCc -3'
miRNA:   3'- -AGUGCG-----------ACGA-GCUGCUCCUCU-----AGCAG- -5'
8957 3' -54.9 NC_002512.2 + 130550 0.73 0.727223
Target:  5'- gUC-CGgaUGCUCGuCGAGGAGuUCGUCg -3'
miRNA:   3'- -AGuGCg-ACGAGCuGCUCCUCuAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 130686 0.68 0.928205
Target:  5'- aCGgGCUGCUCGugGuGGGGccCGcCg -3'
miRNA:   3'- aGUgCGACGAGCugCuCCUCuaGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.