miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8957 3' -54.9 NC_002512.2 + 15543 0.7 0.865606
Target:  5'- cUCugGCU-CUCGcUGAGGAGGccggagUCGUCg -3'
miRNA:   3'- -AGugCGAcGAGCuGCUCCUCU------AGCAG- -5'
8957 3' -54.9 NC_002512.2 + 45370 0.7 0.865606
Target:  5'- cCGCGaCUGCUgCGACGAGGAcgcgggccggGAcUGUCg -3'
miRNA:   3'- aGUGC-GACGA-GCUGCUCCU----------CUaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 85286 0.7 0.865606
Target:  5'- -gGCGCggacCUCGuGCGAGGGGAUCGa- -3'
miRNA:   3'- agUGCGac--GAGC-UGCUCCUCUAGCag -5'
8957 3' -54.9 NC_002512.2 + 219814 0.7 0.865606
Target:  5'- aCGCGCgggGCgCGAC-AGGGGGUCGgUCg -3'
miRNA:   3'- aGUGCGa--CGaGCUGcUCCUCUAGC-AG- -5'
8957 3' -54.9 NC_002512.2 + 137799 0.7 0.865606
Target:  5'- aCACGagaUGCUCGACGAGaacugCGUCg -3'
miRNA:   3'- aGUGCg--ACGAGCUGCUCcucuaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 147805 0.7 0.879863
Target:  5'- aCGCGCgcccgugGCUCGAgagccuCGGGGGGAUCa-- -3'
miRNA:   3'- aGUGCGa------CGAGCU------GCUCCUCUAGcag -5'
8957 3' -54.9 NC_002512.2 + 168701 0.7 0.879863
Target:  5'- aUCAUGCUGUcCGACGccgucgGGGAGcUCGUg -3'
miRNA:   3'- -AGUGCGACGaGCUGC------UCCUCuAGCAg -5'
8957 3' -54.9 NC_002512.2 + 223627 0.7 0.879863
Target:  5'- gUCGCugguGCUGCUCGGCGGGc---UCGUCa -3'
miRNA:   3'- -AGUG----CGACGAGCUGCUCcucuAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 112496 0.69 0.886678
Target:  5'- gCGCGCaGCcCGACGAGuAGAUCGa- -3'
miRNA:   3'- aGUGCGaCGaGCUGCUCcUCUAGCag -5'
8957 3' -54.9 NC_002512.2 + 39698 0.69 0.886678
Target:  5'- cCGCGCUagaacccgggacGUUCGACGAGGAuuUCGg- -3'
miRNA:   3'- aGUGCGA------------CGAGCUGCUCCUcuAGCag -5'
8957 3' -54.9 NC_002512.2 + 151569 0.69 0.886678
Target:  5'- uUCcCGagaGC-CGGCGAGGAGAUCGgUCa -3'
miRNA:   3'- -AGuGCga-CGaGCUGCUCCUCUAGC-AG- -5'
8957 3' -54.9 NC_002512.2 + 124949 0.69 0.893278
Target:  5'- cCGCGCcgacGC-CgGACGAGGAGGcCGUCg -3'
miRNA:   3'- aGUGCGa---CGaG-CUGCUCCUCUaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 89110 0.69 0.893278
Target:  5'- gCGCGuCUGgUCGGCGGucguuuGGAGggCGUCu -3'
miRNA:   3'- aGUGC-GACgAGCUGCU------CCUCuaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 81690 0.69 0.893278
Target:  5'- gCcCGCaGCUCGGCGgccGGGAGggUGUCg -3'
miRNA:   3'- aGuGCGaCGAGCUGC---UCCUCuaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 106644 0.69 0.893278
Target:  5'- -gGCGCcgGCUCGGCGAGuaguccuccGAGAUguagCGUCg -3'
miRNA:   3'- agUGCGa-CGAGCUGCUC---------CUCUA----GCAG- -5'
8957 3' -54.9 NC_002512.2 + 195387 0.69 0.90582
Target:  5'- gUCAC-CUGCcgggUCGACcGGGAGcUCGUCu -3'
miRNA:   3'- -AGUGcGACG----AGCUGcUCCUCuAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 209945 0.69 0.90582
Target:  5'- uUCGUGCUGCUCGACcGGGcgcGGGUCcUCa -3'
miRNA:   3'- -AGUGCGACGAGCUGcUCC---UCUAGcAG- -5'
8957 3' -54.9 NC_002512.2 + 211843 0.69 0.90582
Target:  5'- cCGgGCU-CUCGGcCGAGGAGAaggaccucagcaUCGUCg -3'
miRNA:   3'- aGUgCGAcGAGCU-GCUCCUCU------------AGCAG- -5'
8957 3' -54.9 NC_002512.2 + 138584 0.69 0.90582
Target:  5'- cCACGCUGCggaucgCGGcCGGGGAGA-CGc- -3'
miRNA:   3'- aGUGCGACGa-----GCU-GCUCCUCUaGCag -5'
8957 3' -54.9 NC_002512.2 + 226573 0.69 0.911757
Target:  5'- aCGCGUgugGCggaUGGCGAGGAGGcaUCGUg -3'
miRNA:   3'- aGUGCGa--CGa--GCUGCUCCUCU--AGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.