miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8957 5' -56.4 NC_002512.2 + 10594 0.67 0.919626
Target:  5'- cGGACGACGaa---GCgGGCCACGg- -3'
miRNA:   3'- cCCUGCUGUacaagCGgCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 188636 0.67 0.919626
Target:  5'- cGGGCcGCAaGggCGCCGGCgGCGg- -3'
miRNA:   3'- cCCUGcUGUaCaaGCGGCCGgUGCac -5'
8957 5' -56.4 NC_002512.2 + 124005 0.68 0.914109
Target:  5'- cGGACcugaGCGUGUUCGCgCugccccugGGCCACGUc -3'
miRNA:   3'- cCCUGc---UGUACAAGCG-G--------CCGGUGCAc -5'
8957 5' -56.4 NC_002512.2 + 132026 0.68 0.914109
Target:  5'- cGGcGGCGACG---UCGUCGGCCAgGg- -3'
miRNA:   3'- -CC-CUGCUGUacaAGCGGCCGGUgCac -5'
8957 5' -56.4 NC_002512.2 + 190049 0.68 0.914109
Target:  5'- -cGACGAgguCAUGUUCauccacgaGCUGGCCGCGg- -3'
miRNA:   3'- ccCUGCU---GUACAAG--------CGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 131105 0.68 0.914109
Target:  5'- uGGACGugGUG--CGCCGGgCCACc-- -3'
miRNA:   3'- cCCUGCugUACaaGCGGCC-GGUGcac -5'
8957 5' -56.4 NC_002512.2 + 8441 0.68 0.914109
Target:  5'- cGGACGACcg---CGCCccGGCCGCGg- -3'
miRNA:   3'- cCCUGCUGuacaaGCGG--CCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 103577 0.68 0.914109
Target:  5'- gGGaGACGACGcc-UCGCaGGCCACGa- -3'
miRNA:   3'- -CC-CUGCUGUacaAGCGgCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 140937 0.68 0.910693
Target:  5'- cGGGACGGCGacgaggcggaagggGggCgGCuCGGUCGCGUGg -3'
miRNA:   3'- -CCCUGCUGUa-------------CaaG-CG-GCCGGUGCAC- -5'
8957 5' -56.4 NC_002512.2 + 16588 0.68 0.908372
Target:  5'- aGGAaauCGACGaGgUCGUCGGCCACGc- -3'
miRNA:   3'- cCCU---GCUGUaCaAGCGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 126460 0.68 0.903024
Target:  5'- cGGGACGACGcGUUCGaCGGCgucuucgacgaguuCGUGg -3'
miRNA:   3'- -CCCUGCUGUaCAAGCgGCCGgu------------GCAC- -5'
8957 5' -56.4 NC_002512.2 + 197497 0.68 0.902419
Target:  5'- cGGAcaCGACGcGUUCGUgGGCCGCa-- -3'
miRNA:   3'- cCCU--GCUGUaCAAGCGgCCGGUGcac -5'
8957 5' -56.4 NC_002512.2 + 121568 0.68 0.902419
Target:  5'- uGGAgGACGUGUucUCGuuGGCCGaGUc -3'
miRNA:   3'- cCCUgCUGUACA--AGCggCCGGUgCAc -5'
8957 5' -56.4 NC_002512.2 + 68903 0.68 0.902419
Target:  5'- cGGGGCGGuCGUGc-UGCUGGCCGCc-- -3'
miRNA:   3'- -CCCUGCU-GUACaaGCGGCCGGUGcac -5'
8957 5' -56.4 NC_002512.2 + 94405 0.68 0.902419
Target:  5'- aGGACGGCGgucuUGgcgcuccaGUCGGCCGCGUc -3'
miRNA:   3'- cCCUGCUGU----ACaag-----CGGCCGGUGCAc -5'
8957 5' -56.4 NC_002512.2 + 157169 0.68 0.902419
Target:  5'- cGGGCGGCGUGggCGgCGG-CGCGa- -3'
miRNA:   3'- cCCUGCUGUACaaGCgGCCgGUGCac -5'
8957 5' -56.4 NC_002512.2 + 126448 0.68 0.902419
Target:  5'- cGGcGACGGCGgcggccgccuUGUUCGCCGucgucGUCGCGUc -3'
miRNA:   3'- -CC-CUGCUGU----------ACAAGCGGC-----CGGUGCAc -5'
8957 5' -56.4 NC_002512.2 + 219324 0.68 0.896251
Target:  5'- gGGGAgagcguCGGCGUGgccCGCCGGCUgcccgGCGUc -3'
miRNA:   3'- -CCCU------GCUGUACaa-GCGGCCGG-----UGCAc -5'
8957 5' -56.4 NC_002512.2 + 117136 0.68 0.896251
Target:  5'- cGGGACGGCcgGcucucCGCCuuCCGCGUGc -3'
miRNA:   3'- -CCCUGCUGuaCaa---GCGGccGGUGCAC- -5'
8957 5' -56.4 NC_002512.2 + 79608 0.68 0.889871
Target:  5'- cGGGCGGCAg---CGCCGGgUCGCGg- -3'
miRNA:   3'- cCCUGCUGUacaaGCGGCC-GGUGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.