Results 41 - 60 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8958 | 3' | -64.8 | NC_002512.2 | + | 119932 | 0.67 | 0.533592 |
Target: 5'- gAGCGCGgCGUCGCCCccGCaCGcGGUGg -3' miRNA: 3'- -UCGCGCaGCGGCGGGa-CGaGCcCCAC- -5' |
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8958 | 3' | -64.8 | NC_002512.2 | + | 108418 | 0.67 | 0.533592 |
Target: 5'- uGCuCGUcugCGCCGCCCgggGC-CGGGGg- -3' miRNA: 3'- uCGcGCA---GCGGCGGGa--CGaGCCCCac -5' |
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8958 | 3' | -64.8 | NC_002512.2 | + | 15305 | 0.67 | 0.533592 |
Target: 5'- gAGCGUcUCGUCGCCCagGCgggaGGGGa- -3' miRNA: 3'- -UCGCGcAGCGGCGGGa-CGag--CCCCac -5' |
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8958 | 3' | -64.8 | NC_002512.2 | + | 193845 | 0.67 | 0.534503 |
Target: 5'- cGGgGCGUCcCCGCUCUGCccaguacaucggacgCGGcGGUGg -3' miRNA: 3'- -UCgCGCAGcGGCGGGACGa--------------GCC-CCAC- -5' |
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8958 | 3' | -64.8 | NC_002512.2 | + | 118215 | 0.67 | 0.542725 |
Target: 5'- uGGUGCGaCGggGCCCucgUGCUCGGGGa- -3' miRNA: 3'- -UCGCGCaGCggCGGG---ACGAGCCCCac -5' |
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8958 | 3' | -64.8 | NC_002512.2 | + | 215155 | 0.67 | 0.542725 |
Target: 5'- aGGCGaCGagcaccUgGCCGUCCugcUGCUCGGGGa- -3' miRNA: 3'- -UCGC-GC------AgCGGCGGG---ACGAGCCCCac -5' |
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8958 | 3' | -64.8 | NC_002512.2 | + | 220370 | 0.67 | 0.542725 |
Target: 5'- uGGC-CGcCGCCGCCgUGCU-GGGGc- -3' miRNA: 3'- -UCGcGCaGCGGCGGgACGAgCCCCac -5' |
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8958 | 3' | -64.8 | NC_002512.2 | + | 169081 | 0.67 | 0.54823 |
Target: 5'- cGGCgGCGUCGCgGCCC-GCguccucguccucgCGGGGc- -3' miRNA: 3'- -UCG-CGCAGCGgCGGGaCGa------------GCCCCac -5' |
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8958 | 3' | -64.8 | NC_002512.2 | + | 45294 | 0.67 | 0.55191 |
Target: 5'- cGCGgGUcggacggacCGCCGCCCUGCcggccCGcGGGUc -3' miRNA: 3'- uCGCgCA---------GCGGCGGGACGa----GC-CCCAc -5' |
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8958 | 3' | -64.8 | NC_002512.2 | + | 96651 | 0.67 | 0.561141 |
Target: 5'- cGGgGCGcCGCCGCCCUcccguccucGCUgGGcGGa- -3' miRNA: 3'- -UCgCGCaGCGGCGGGA---------CGAgCC-CCac -5' |
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8958 | 3' | -64.8 | NC_002512.2 | + | 97338 | 0.67 | 0.5667 |
Target: 5'- gAGgGCGgagaggccgacggCGCCGCCC-GCggagCGGGGa- -3' miRNA: 3'- -UCgCGCa------------GCGGCGGGaCGa---GCCCCac -5' |
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8958 | 3' | -64.8 | NC_002512.2 | + | 218106 | 0.67 | 0.570413 |
Target: 5'- cGgGCGUCG-CGCCCggggucGCUCGGGu-- -3' miRNA: 3'- uCgCGCAGCgGCGGGa-----CGAGCCCcac -5' |
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8958 | 3' | -64.8 | NC_002512.2 | + | 62720 | 0.67 | 0.570413 |
Target: 5'- cAGCGCGUCGCgGUCgacgGCcucgCGGGGc- -3' miRNA: 3'- -UCGCGCAGCGgCGGga--CGa---GCCCCac -5' |
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8958 | 3' | -64.8 | NC_002512.2 | + | 49721 | 0.67 | 0.570413 |
Target: 5'- -aCGCGUCGUa--CCUGCUCGGGa-- -3' miRNA: 3'- ucGCGCAGCGgcgGGACGAGCCCcac -5' |
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8958 | 3' | -64.8 | NC_002512.2 | + | 104472 | 0.67 | 0.570413 |
Target: 5'- uGGUGuCGUCGuUCGCCCUcggGCcCGGGGa- -3' miRNA: 3'- -UCGC-GCAGC-GGCGGGA---CGaGCCCCac -5' |
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8958 | 3' | -64.8 | NC_002512.2 | + | 102797 | 0.67 | 0.570413 |
Target: 5'- cGC-CGcCGCCGCCCUccGCUCcGGGa- -3' miRNA: 3'- uCGcGCaGCGGCGGGA--CGAGcCCCac -5' |
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8958 | 3' | -64.8 | NC_002512.2 | + | 223221 | 0.67 | 0.579723 |
Target: 5'- gAGCGCGUC-CCGgCCgGCUCGGu--- -3' miRNA: 3'- -UCGCGCAGcGGCgGGaCGAGCCccac -5' |
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8958 | 3' | -64.8 | NC_002512.2 | + | 4162 | 0.67 | 0.579723 |
Target: 5'- gAGCGaGUCGCCGCg--GCUCGcGGGc- -3' miRNA: 3'- -UCGCgCAGCGGCGggaCGAGC-CCCac -5' |
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8958 | 3' | -64.8 | NC_002512.2 | + | 26732 | 0.67 | 0.579723 |
Target: 5'- uGCGCGUCGCCggcGCCgCUGUaCGccacGGUGa -3' miRNA: 3'- uCGCGCAGCGG---CGG-GACGaGCc---CCAC- -5' |
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8958 | 3' | -64.8 | NC_002512.2 | + | 105699 | 0.66 | 0.589064 |
Target: 5'- uGUGCGU-GCCGaacgCCgcGCUCGGGGUc -3' miRNA: 3'- uCGCGCAgCGGCg---GGa-CGAGCCCCAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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