miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8958 3' -64.8 NC_002512.2 + 181599 0.69 0.421194
Target:  5'- cGGCGgGUcCGCgaCGUccuCCUGCUCGGGGg- -3'
miRNA:   3'- -UCGCgCA-GCG--GCG---GGACGAGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 205618 0.69 0.428523
Target:  5'- uGC-CGUCGCCGCcguccuuCCUGCccgCGGGGg- -3'
miRNA:   3'- uCGcGCAGCGGCG-------GGACGa--GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 63679 0.69 0.453487
Target:  5'- cGCGCGgcccuccUCGCCGCCCaagaagGCcaCGGGGa- -3'
miRNA:   3'- uCGCGC-------AGCGGCGGGa-----CGa-GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 122842 0.69 0.454332
Target:  5'- cGCGacgGUCGCCGCCCUGCU-GGa--- -3'
miRNA:   3'- uCGCg--CAGCGGCGGGACGAgCCccac -5'
8958 3' -64.8 NC_002512.2 + 103225 0.69 0.457724
Target:  5'- cGGCucGCGUCGCCGCCCgucgacgGCcgCGGcgagggcauggaggaGGUGa -3'
miRNA:   3'- -UCG--CGCAGCGGCGGGa------CGa-GCC---------------CCAC- -5'
8958 3' -64.8 NC_002512.2 + 10761 0.69 0.462836
Target:  5'- gAGCGCGUCGUCgGCCCcGC-CGcGGUa -3'
miRNA:   3'- -UCGCGCAGCGG-CGGGaCGaGCcCCAc -5'
8958 3' -64.8 NC_002512.2 + 21512 0.68 0.468838
Target:  5'- cAGCGUcgggccaccucgucGUCGaaaCGCaCCUGCUCcucgGGGGUGa -3'
miRNA:   3'- -UCGCG--------------CAGCg--GCG-GGACGAG----CCCCAC- -5'
8958 3' -64.8 NC_002512.2 + 219600 0.68 0.471423
Target:  5'- uGGC-CGacUCGCUGCCCggcuucucggGCaUCGGGGUGu -3'
miRNA:   3'- -UCGcGC--AGCGGCGGGa---------CG-AGCCCCAC- -5'
8958 3' -64.8 NC_002512.2 + 75101 0.68 0.48009
Target:  5'- gGGCucgaCGUCGCCGCCUgGCggacaCGGGGa- -3'
miRNA:   3'- -UCGc---GCAGCGGCGGGaCGa----GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 183971 0.68 0.48009
Target:  5'- cGgGCGUCGUCGCCUg--UCGGGGc- -3'
miRNA:   3'- uCgCGCAGCGGCGGGacgAGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 12790 0.68 0.487956
Target:  5'- cGGCGCcccCGCUGCCCcugcggaUGCUCGGGcGg- -3'
miRNA:   3'- -UCGCGca-GCGGCGGG-------ACGAGCCC-Cac -5'
8958 3' -64.8 NC_002512.2 + 184872 0.68 0.488834
Target:  5'- cAGCGUG-CGCUGCUaCUGCcaCGGGGUc -3'
miRNA:   3'- -UCGCGCaGCGGCGG-GACGa-GCCCCAc -5'
8958 3' -64.8 NC_002512.2 + 99102 0.68 0.488834
Target:  5'- uGCGCGUCgGCgGCCCUcCUCGuGGUc -3'
miRNA:   3'- uCGCGCAG-CGgCGGGAcGAGCcCCAc -5'
8958 3' -64.8 NC_002512.2 + 91895 0.68 0.497651
Target:  5'- cGGCGCGgCGCacgGCCC-GCUCGGGc-- -3'
miRNA:   3'- -UCGCGCaGCGg--CGGGaCGAGCCCcac -5'
8958 3' -64.8 NC_002512.2 + 141911 0.68 0.497651
Target:  5'- cGGgGCGcCGCgGCCCcGa-CGGGGUGa -3'
miRNA:   3'- -UCgCGCaGCGgCGGGaCgaGCCCCAC- -5'
8958 3' -64.8 NC_002512.2 + 74624 0.68 0.506539
Target:  5'- gAGCGCGagacCGCCGCgCgacgGCcCGGGGg- -3'
miRNA:   3'- -UCGCGCa---GCGGCGgGa---CGaGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 154339 0.68 0.506539
Target:  5'- -cCGCGUCGUCGUCCUccgccacgGCgUCGaGGGUGc -3'
miRNA:   3'- ucGCGCAGCGGCGGGA--------CG-AGC-CCCAC- -5'
8958 3' -64.8 NC_002512.2 + 94685 0.68 0.506539
Target:  5'- cGGCGCG-CaGCUGCCCUcgugcgacaGCUCGcGGUGc -3'
miRNA:   3'- -UCGCGCaG-CGGCGGGA---------CGAGCcCCAC- -5'
8958 3' -64.8 NC_002512.2 + 131994 0.68 0.515495
Target:  5'- cGCGUGg-GCCGCCCcggGCgcCGGGGg- -3'
miRNA:   3'- uCGCGCagCGGCGGGa--CGa-GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 72867 0.68 0.515495
Target:  5'- gGGcCGCGUCGCCGUugUCgcgggGCUCGGGc-- -3'
miRNA:   3'- -UC-GCGCAGCGGCG--GGa----CGAGCCCcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.