miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8958 3' -64.8 NC_002512.2 + 211177 1.06 0.001173
Target:  5'- gAGCGCGUCGCCGCCCUGCUCGGGGUGc -3'
miRNA:   3'- -UCGCGCAGCGGCGGGACGAGCCCCAC- -5'
8958 3' -64.8 NC_002512.2 + 100793 0.75 0.200045
Target:  5'- cGcCGCGaCGCCGCCCgucCUCGGGGUc -3'
miRNA:   3'- uC-GCGCaGCGGCGGGac-GAGCCCCAc -5'
8958 3' -64.8 NC_002512.2 + 217493 0.74 0.214172
Target:  5'- cGGCGCcgccGcCGCCGCCCgaaggcgaGCUCGGGGg- -3'
miRNA:   3'- -UCGCG----CaGCGGCGGGa-------CGAGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 117963 0.74 0.218574
Target:  5'- uGCGUGgacgcuccccgccUgGCCGUgCUGCUCGGGGUGc -3'
miRNA:   3'- uCGCGC-------------AgCGGCGgGACGAGCCCCAC- -5'
8958 3' -64.8 NC_002512.2 + 117990 0.74 0.229146
Target:  5'- cGCGCGgccgcUCGUCGUCCaUGCaCGGGGUGg -3'
miRNA:   3'- uCGCGC-----AGCGGCGGG-ACGaGCCCCAC- -5'
8958 3' -64.8 NC_002512.2 + 139257 0.74 0.229146
Target:  5'- cGGCGcCGggucgCGCCGCCCgGCgcgCGGGGg- -3'
miRNA:   3'- -UCGC-GCa----GCGGCGGGaCGa--GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 224601 0.73 0.27342
Target:  5'- gGGCGCGggacgcggUGCCGaCCggGCUCGGGGUc -3'
miRNA:   3'- -UCGCGCa-------GCGGCgGGa-CGAGCCCCAc -5'
8958 3' -64.8 NC_002512.2 + 113711 0.72 0.317568
Target:  5'- cAGCGCGUgGaacuCGCCCggcgccagcgGCUCGGGGa- -3'
miRNA:   3'- -UCGCGCAgCg---GCGGGa---------CGAGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 129358 0.71 0.338069
Target:  5'- gGGCaGCGUCGUCGCCuuCUGuCUCGugcGGGUGc -3'
miRNA:   3'- -UCG-CGCAGCGGCGG--GAC-GAGC---CCCAC- -5'
8958 3' -64.8 NC_002512.2 + 30426 0.71 0.352261
Target:  5'- gGGCGuCGUCGCgGCCCUGaaCGcGGGc- -3'
miRNA:   3'- -UCGC-GCAGCGgCGGGACgaGC-CCCac -5'
8958 3' -64.8 NC_002512.2 + 70825 0.71 0.352261
Target:  5'- gGGCGCGUCGuCCGCCUcGCccCGGGa-- -3'
miRNA:   3'- -UCGCGCAGC-GGCGGGaCGa-GCCCcac -5'
8958 3' -64.8 NC_002512.2 + 8151 0.71 0.359515
Target:  5'- cGGCGCGU--CCGCCaggcGCUCGGGGa- -3'
miRNA:   3'- -UCGCGCAgcGGCGGga--CGAGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 10431 0.7 0.381893
Target:  5'- cGCGuCGUCGCCGUCggGCaCGGGGg- -3'
miRNA:   3'- uCGC-GCAGCGGCGGgaCGaGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 138005 0.7 0.386479
Target:  5'- cGcCGCGcCGCCGCCCgcgccggacggcgGcCUCGGGGg- -3'
miRNA:   3'- uC-GCGCaGCGGCGGGa------------C-GAGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 181384 0.7 0.388785
Target:  5'- cGCGCGUCGUcgugCGCCCUggccuccGC-CGGGGa- -3'
miRNA:   3'- uCGCGCAGCG----GCGGGA-------CGaGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 220012 0.7 0.389556
Target:  5'- cGGCGgGUCgagagGCCGCUCcGuCUCGGGGUc -3'
miRNA:   3'- -UCGCgCAG-----CGGCGGGaC-GAGCCCCAc -5'
8958 3' -64.8 NC_002512.2 + 90024 0.7 0.392649
Target:  5'- uGuCG-GUCGCCGUCCUguguggccuggccucGCUCGGGGUc -3'
miRNA:   3'- uC-GCgCAGCGGCGGGA---------------CGAGCCCCAc -5'
8958 3' -64.8 NC_002512.2 + 111113 0.7 0.397319
Target:  5'- cGGCgGCGgaggCGCCGCCCg---CGGGGUc -3'
miRNA:   3'- -UCG-CGCa---GCGGCGGGacgaGCCCCAc -5'
8958 3' -64.8 NC_002512.2 + 222255 0.7 0.413139
Target:  5'- uGGCGgGUCucgugaugGCCugcGCCCUGCUCGGGc-- -3'
miRNA:   3'- -UCGCgCAG--------CGG---CGGGACGAGCCCcac -5'
8958 3' -64.8 NC_002512.2 + 82015 0.7 0.413139
Target:  5'- cGGCGaGcCGUCGCCCgGgUCGGGGUc -3'
miRNA:   3'- -UCGCgCaGCGGCGGGaCgAGCCCCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.