miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8958 3' -64.8 NC_002512.2 + 4162 0.67 0.579723
Target:  5'- gAGCGaGUCGCCGCg--GCUCGcGGGc- -3'
miRNA:   3'- -UCGCgCAGCGGCGggaCGAGC-CCCac -5'
8958 3' -64.8 NC_002512.2 + 8151 0.71 0.359515
Target:  5'- cGGCGCGU--CCGCCaggcGCUCGGGGa- -3'
miRNA:   3'- -UCGCGCAgcGGCGGga--CGAGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 10431 0.7 0.381893
Target:  5'- cGCGuCGUCGCCGUCggGCaCGGGGg- -3'
miRNA:   3'- uCGC-GCAGCGGCGGgaCGaGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 10761 0.69 0.462836
Target:  5'- gAGCGCGUCGUCgGCCCcGC-CGcGGUa -3'
miRNA:   3'- -UCGCGCAGCGG-CGGGaCGaGCcCCAc -5'
8958 3' -64.8 NC_002512.2 + 12790 0.68 0.487956
Target:  5'- cGGCGCcccCGCUGCCCcugcggaUGCUCGGGcGg- -3'
miRNA:   3'- -UCGCGca-GCGGCGGG-------ACGAGCCC-Cac -5'
8958 3' -64.8 NC_002512.2 + 15302 0.66 0.611581
Target:  5'- uAGCGUucuccucauaaucggGaUCGUCGCCCUGgUCGcGGUGa -3'
miRNA:   3'- -UCGCG---------------C-AGCGGCGGGACgAGCcCCAC- -5'
8958 3' -64.8 NC_002512.2 + 15305 0.67 0.533592
Target:  5'- gAGCGUcUCGUCGCCCagGCgggaGGGGa- -3'
miRNA:   3'- -UCGCGcAGCGGCGGGa-CGag--CCCCac -5'
8958 3' -64.8 NC_002512.2 + 21512 0.68 0.468838
Target:  5'- cAGCGUcgggccaccucgucGUCGaaaCGCaCCUGCUCcucgGGGGUGa -3'
miRNA:   3'- -UCGCG--------------CAGCg--GCG-GGACGAG----CCCCAC- -5'
8958 3' -64.8 NC_002512.2 + 26732 0.67 0.579723
Target:  5'- uGCGCGUCGCCggcGCCgCUGUaCGccacGGUGa -3'
miRNA:   3'- uCGCGCAGCGG---CGG-GACGaGCc---CCAC- -5'
8958 3' -64.8 NC_002512.2 + 30426 0.71 0.352261
Target:  5'- gGGCGuCGUCGCgGCCCUGaaCGcGGGc- -3'
miRNA:   3'- -UCGC-GCAGCGgCGGGACgaGC-CCCac -5'
8958 3' -64.8 NC_002512.2 + 45294 0.67 0.55191
Target:  5'- cGCGgGUcggacggacCGCCGCCCUGCcggccCGcGGGUc -3'
miRNA:   3'- uCGCgCA---------GCGGCGGGACGa----GC-CCCAc -5'
8958 3' -64.8 NC_002512.2 + 49721 0.67 0.570413
Target:  5'- -aCGCGUCGUa--CCUGCUCGGGa-- -3'
miRNA:   3'- ucGCGCAGCGgcgGGACGAGCCCcac -5'
8958 3' -64.8 NC_002512.2 + 62720 0.67 0.570413
Target:  5'- cAGCGCGUCGCgGUCgacgGCcucgCGGGGc- -3'
miRNA:   3'- -UCGCGCAGCGgCGGga--CGa---GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 63444 0.66 0.626639
Target:  5'- cGGCGcCGUCGCC-CCCggagGacggCGGGGa- -3'
miRNA:   3'- -UCGC-GCAGCGGcGGGa---Cga--GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 63679 0.69 0.453487
Target:  5'- cGCGCGgcccuccUCGCCGCCCaagaagGCcaCGGGGa- -3'
miRNA:   3'- uCGCGC-------AGCGGCGGGa-----CGa-GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 70825 0.71 0.352261
Target:  5'- gGGCGCGUCGuCCGCCUcGCccCGGGa-- -3'
miRNA:   3'- -UCGCGCAGC-GGCGGGaCGa-GCCCcac -5'
8958 3' -64.8 NC_002512.2 + 72867 0.68 0.515495
Target:  5'- gGGcCGCGUCGCCGUugUCgcgggGCUCGGGc-- -3'
miRNA:   3'- -UC-GCGCAGCGGCG--GGa----CGAGCCCcac -5'
8958 3' -64.8 NC_002512.2 + 74624 0.68 0.506539
Target:  5'- gAGCGCGagacCGCCGCgCgacgGCcCGGGGg- -3'
miRNA:   3'- -UCGCGCa---GCGGCGgGa---CGaGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 75101 0.68 0.48009
Target:  5'- gGGCucgaCGUCGCCGCCUgGCggacaCGGGGa- -3'
miRNA:   3'- -UCGc---GCAGCGGCGGGaCGa----GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 79472 0.66 0.589064
Target:  5'- cGGgGCGacCGCgCGCCCgugggcgGUUCGGGGa- -3'
miRNA:   3'- -UCgCGCa-GCG-GCGGGa------CGAGCCCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.