miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8958 3' -64.8 NC_002512.2 + 224695 0.66 0.607821
Target:  5'- cGCG-GUCcugcCCGCCCUGCU-GGGGc- -3'
miRNA:   3'- uCGCgCAGc---GGCGGGACGAgCCCCac -5'
8958 3' -64.8 NC_002512.2 + 224601 0.73 0.27342
Target:  5'- gGGCGCGggacgcggUGCCGaCCggGCUCGGGGUc -3'
miRNA:   3'- -UCGCGCa-------GCGGCgGGa-CGAGCCCCAc -5'
8958 3' -64.8 NC_002512.2 + 223221 0.67 0.579723
Target:  5'- gAGCGCGUC-CCGgCCgGCUCGGu--- -3'
miRNA:   3'- -UCGCGCAGcGGCgGGaCGAGCCccac -5'
8958 3' -64.8 NC_002512.2 + 222255 0.7 0.413139
Target:  5'- uGGCGgGUCucgugaugGCCugcGCCCUGCUCGGGc-- -3'
miRNA:   3'- -UCGCgCAG--------CGG---CGGGACGAGCCCcac -5'
8958 3' -64.8 NC_002512.2 + 220370 0.67 0.542725
Target:  5'- uGGC-CGcCGCCGCCgUGCU-GGGGc- -3'
miRNA:   3'- -UCGcGCaGCGGCGGgACGAgCCCCac -5'
8958 3' -64.8 NC_002512.2 + 220162 0.66 0.617225
Target:  5'- aAGgGCGUCG-UGCUCUGCgUCGGGa-- -3'
miRNA:   3'- -UCgCGCAGCgGCGGGACG-AGCCCcac -5'
8958 3' -64.8 NC_002512.2 + 220012 0.7 0.389556
Target:  5'- cGGCGgGUCgagagGCCGCUCcGuCUCGGGGUc -3'
miRNA:   3'- -UCGCgCAG-----CGGCGGGaC-GAGCCCCAc -5'
8958 3' -64.8 NC_002512.2 + 219600 0.68 0.471423
Target:  5'- uGGC-CGacUCGCUGCCCggcuucucggGCaUCGGGGUGu -3'
miRNA:   3'- -UCGcGC--AGCGGCGGGa---------CG-AGCCCCAC- -5'
8958 3' -64.8 NC_002512.2 + 218106 0.67 0.570413
Target:  5'- cGgGCGUCG-CGCCCggggucGCUCGGGu-- -3'
miRNA:   3'- uCgCGCAGCgGCGGGa-----CGAGCCCcac -5'
8958 3' -64.8 NC_002512.2 + 217493 0.74 0.214172
Target:  5'- cGGCGCcgccGcCGCCGCCCgaaggcgaGCUCGGGGg- -3'
miRNA:   3'- -UCGCG----CaGCGGCGGGa-------CGAGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 215155 0.67 0.542725
Target:  5'- aGGCGaCGagcaccUgGCCGUCCugcUGCUCGGGGa- -3'
miRNA:   3'- -UCGC-GC------AgCGGCGGG---ACGAGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 211177 1.06 0.001173
Target:  5'- gAGCGCGUCGCCGCCCUGCUCGGGGUGc -3'
miRNA:   3'- -UCGCGCAGCGGCGGGACGAGCCCCAC- -5'
8958 3' -64.8 NC_002512.2 + 205618 0.69 0.428523
Target:  5'- uGC-CGUCGCCGCcguccuuCCUGCccgCGGGGg- -3'
miRNA:   3'- uCGcGCAGCGGCG-------GGACGa--GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 193845 0.67 0.534503
Target:  5'- cGGgGCGUCcCCGCUCUGCccaguacaucggacgCGGcGGUGg -3'
miRNA:   3'- -UCgCGCAGcGGCGGGACGa--------------GCC-CCAC- -5'
8958 3' -64.8 NC_002512.2 + 184872 0.68 0.488834
Target:  5'- cAGCGUG-CGCUGCUaCUGCcaCGGGGUc -3'
miRNA:   3'- -UCGCGCaGCGGCGG-GACGa-GCCCCAc -5'
8958 3' -64.8 NC_002512.2 + 183971 0.68 0.48009
Target:  5'- cGgGCGUCGUCGCCUg--UCGGGGc- -3'
miRNA:   3'- uCgCGCAGCGGCGGGacgAGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 181599 0.69 0.421194
Target:  5'- cGGCGgGUcCGCgaCGUccuCCUGCUCGGGGg- -3'
miRNA:   3'- -UCGCgCA-GCG--GCG---GGACGAGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 181384 0.7 0.388785
Target:  5'- cGCGCGUCGUcgugCGCCCUggccuccGC-CGGGGa- -3'
miRNA:   3'- uCGCGCAGCG----GCGGGA-------CGaGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 176406 0.66 0.626639
Target:  5'- cGcCGCGUCGUgGCaCCUGUccagCaGGGUGg -3'
miRNA:   3'- uC-GCGCAGCGgCG-GGACGa---GcCCCAC- -5'
8958 3' -64.8 NC_002512.2 + 169081 0.67 0.54823
Target:  5'- cGGCgGCGUCGCgGCCC-GCguccucguccucgCGGGGc- -3'
miRNA:   3'- -UCG-CGCAGCGgCGGGaCGa------------GCCCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.