miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8958 3' -64.8 NC_002512.2 + 80809 0.66 0.626639
Target:  5'- gAGCGCG-CGCgCGCCUcgGCgUCGGcGGa- -3'
miRNA:   3'- -UCGCGCaGCG-GCGGGa-CG-AGCC-CCac -5'
8958 3' -64.8 NC_002512.2 + 81793 0.66 0.607821
Target:  5'- cGGCGC--CGCCGCCgCcGC-CGGGGg- -3'
miRNA:   3'- -UCGCGcaGCGGCGG-GaCGaGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 81828 0.66 0.607821
Target:  5'- cGGCGCGUCcgaucuGCCGgaCCgGgUCGGGGa- -3'
miRNA:   3'- -UCGCGCAG------CGGCg-GGaCgAGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 82015 0.7 0.413139
Target:  5'- cGGCGaGcCGUCGCCCgGgUCGGGGUc -3'
miRNA:   3'- -UCGCgCaGCGGCGGGaCgAGCCCCAc -5'
8958 3' -64.8 NC_002512.2 + 90024 0.7 0.392649
Target:  5'- uGuCG-GUCGCCGUCCUguguggccuggccucGCUCGGGGUc -3'
miRNA:   3'- uC-GCgCAGCGGCGGGA---------------CGAGCCCCAc -5'
8958 3' -64.8 NC_002512.2 + 91895 0.68 0.497651
Target:  5'- cGGCGCGgCGCacgGCCC-GCUCGGGc-- -3'
miRNA:   3'- -UCGCGCaGCGg--CGGGaCGAGCCCcac -5'
8958 3' -64.8 NC_002512.2 + 94685 0.68 0.506539
Target:  5'- cGGCGCG-CaGCUGCCCUcgugcgacaGCUCGcGGUGc -3'
miRNA:   3'- -UCGCGCaG-CGGCGGGA---------CGAGCcCCAC- -5'
8958 3' -64.8 NC_002512.2 + 95006 0.66 0.607821
Target:  5'- aGGaCGCGUCGCguCGUCCgggGCagGGGGg- -3'
miRNA:   3'- -UC-GCGCAGCG--GCGGGa--CGagCCCCac -5'
8958 3' -64.8 NC_002512.2 + 95678 0.66 0.645471
Target:  5'- gAGCGCG-CGuCCGCCggGCcuccggCGGGGa- -3'
miRNA:   3'- -UCGCGCaGC-GGCGGgaCGa-----GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 95752 0.66 0.589064
Target:  5'- gGGaCGCG-CGCCGCgacggccgCCUGgaCGGGGg- -3'
miRNA:   3'- -UC-GCGCaGCGGCG--------GGACgaGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 96651 0.67 0.561141
Target:  5'- cGGgGCGcCGCCGCCCUcccguccucGCUgGGcGGa- -3'
miRNA:   3'- -UCgCGCaGCGGCGGGA---------CGAgCC-CCac -5'
8958 3' -64.8 NC_002512.2 + 97338 0.67 0.5667
Target:  5'- gAGgGCGgagaggccgacggCGCCGCCC-GCggagCGGGGa- -3'
miRNA:   3'- -UCgCGCa------------GCGGCGGGaCGa---GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 99102 0.68 0.488834
Target:  5'- uGCGCGUCgGCgGCCCUcCUCGuGGUc -3'
miRNA:   3'- uCGCGCAG-CGgCGGGAcGAGCcCCAc -5'
8958 3' -64.8 NC_002512.2 + 100793 0.75 0.200045
Target:  5'- cGcCGCGaCGCCGCCCgucCUCGGGGUc -3'
miRNA:   3'- uC-GCGCaGCGGCGGGac-GAGCCCCAc -5'
8958 3' -64.8 NC_002512.2 + 102350 0.66 0.607821
Target:  5'- aAGCGCGUCcUCGgCCUGCagucUCGGGa-- -3'
miRNA:   3'- -UCGCGCAGcGGCgGGACG----AGCCCcac -5'
8958 3' -64.8 NC_002512.2 + 102797 0.67 0.570413
Target:  5'- cGC-CGcCGCCGCCCUccGCUCcGGGa- -3'
miRNA:   3'- uCGcGCaGCGGCGGGA--CGAGcCCCac -5'
8958 3' -64.8 NC_002512.2 + 103225 0.69 0.457724
Target:  5'- cGGCucGCGUCGCCGCCCgucgacgGCcgCGGcgagggcauggaggaGGUGa -3'
miRNA:   3'- -UCG--CGCAGCGGCGGGa------CGa-GCC---------------CCAC- -5'
8958 3' -64.8 NC_002512.2 + 104472 0.67 0.570413
Target:  5'- uGGUGuCGUCGuUCGCCCUcggGCcCGGGGa- -3'
miRNA:   3'- -UCGC-GCAGC-GGCGGGA---CGaGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 105699 0.66 0.589064
Target:  5'- uGUGCGU-GCCGaacgCCgcGCUCGGGGUc -3'
miRNA:   3'- uCGCGCAgCGGCg---GGa-CGAGCCCCAc -5'
8958 3' -64.8 NC_002512.2 + 108418 0.67 0.533592
Target:  5'- uGCuCGUcugCGCCGCCCgggGC-CGGGGg- -3'
miRNA:   3'- uCGcGCA---GCGGCGGGa--CGaGCCCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.