miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8958 3' -64.8 NC_002512.2 + 111113 0.7 0.397319
Target:  5'- cGGCgGCGgaggCGCCGCCCg---CGGGGUc -3'
miRNA:   3'- -UCG-CGCa---GCGGCGGGacgaGCCCCAc -5'
8958 3' -64.8 NC_002512.2 + 111168 0.66 0.598432
Target:  5'- cAGCaCGUCGCCGgCgaGCggcaggCGGGGg- -3'
miRNA:   3'- -UCGcGCAGCGGCgGgaCGa-----GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 113711 0.72 0.317568
Target:  5'- cAGCGCGUgGaacuCGCCCggcgccagcgGCUCGGGGa- -3'
miRNA:   3'- -UCGCGCAgCg---GCGGGa---------CGAGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 117963 0.74 0.218574
Target:  5'- uGCGUGgacgcuccccgccUgGCCGUgCUGCUCGGGGUGc -3'
miRNA:   3'- uCGCGC-------------AgCGGCGgGACGAGCCCCAC- -5'
8958 3' -64.8 NC_002512.2 + 117990 0.74 0.229146
Target:  5'- cGCGCGgccgcUCGUCGUCCaUGCaCGGGGUGg -3'
miRNA:   3'- uCGCGC-----AGCGGCGGG-ACGaGCCCCAC- -5'
8958 3' -64.8 NC_002512.2 + 118215 0.67 0.542725
Target:  5'- uGGUGCGaCGggGCCCucgUGCUCGGGGa- -3'
miRNA:   3'- -UCGCGCaGCggCGGG---ACGAGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 119932 0.67 0.533592
Target:  5'- gAGCGCGgCGUCGCCCccGCaCGcGGUGg -3'
miRNA:   3'- -UCGCGCaGCGGCGGGa-CGaGCcCCAC- -5'
8958 3' -64.8 NC_002512.2 + 122842 0.69 0.454332
Target:  5'- cGCGacgGUCGCCGCCCUGCU-GGa--- -3'
miRNA:   3'- uCGCg--CAGCGGCGGGACGAgCCccac -5'
8958 3' -64.8 NC_002512.2 + 128369 0.66 0.617225
Target:  5'- cGCGCGgUGCC-CCCUGUgcuacgaCGGGGa- -3'
miRNA:   3'- uCGCGCaGCGGcGGGACGa------GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 128775 0.66 0.636056
Target:  5'- gAGCGCacgccgCGCCGCgCgcugGC-CGGGGUc -3'
miRNA:   3'- -UCGCGca----GCGGCGgGa---CGaGCCCCAc -5'
8958 3' -64.8 NC_002512.2 + 129358 0.71 0.338069
Target:  5'- gGGCaGCGUCGUCGCCuuCUGuCUCGugcGGGUGc -3'
miRNA:   3'- -UCG-CGCAGCGGCGG--GAC-GAGC---CCCAC- -5'
8958 3' -64.8 NC_002512.2 + 131994 0.68 0.515495
Target:  5'- cGCGUGg-GCCGCCCcggGCgcCGGGGg- -3'
miRNA:   3'- uCGCGCagCGGCGGGa--CGa-GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 134149 0.66 0.607821
Target:  5'- cGCGCGUC-CCGgCCgGCggggaCGGGGa- -3'
miRNA:   3'- uCGCGCAGcGGCgGGaCGa----GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 138005 0.7 0.386479
Target:  5'- cGcCGCGcCGCCGCCCgcgccggacggcgGcCUCGGGGg- -3'
miRNA:   3'- uC-GCGCaGCGGCGGGa------------C-GAGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 139257 0.74 0.229146
Target:  5'- cGGCGcCGggucgCGCCGCCCgGCgcgCGGGGg- -3'
miRNA:   3'- -UCGC-GCa----GCGGCGGGaCGa--GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 141911 0.68 0.497651
Target:  5'- cGGgGCGcCGCgGCCCcGa-CGGGGUGa -3'
miRNA:   3'- -UCgCGCaGCGgCGGGaCgaGCCCCAC- -5'
8958 3' -64.8 NC_002512.2 + 146834 0.66 0.607821
Target:  5'- cGCGCGagGUCGCCUgGCcCaGGGUGc -3'
miRNA:   3'- uCGCGCagCGGCGGGaCGaGcCCCAC- -5'
8958 3' -64.8 NC_002512.2 + 154339 0.68 0.506539
Target:  5'- -cCGCGUCGUCGUCCUccgccacgGCgUCGaGGGUGc -3'
miRNA:   3'- ucGCGCAGCGGCGGGA--------CG-AGC-CCCAC- -5'
8958 3' -64.8 NC_002512.2 + 159896 0.66 0.617225
Target:  5'- aGGUGUGUCGaCGgcucuuguCCCUGCUgGGGGc- -3'
miRNA:   3'- -UCGCGCAGCgGC--------GGGACGAgCCCCac -5'
8958 3' -64.8 NC_002512.2 + 168036 0.66 0.636056
Target:  5'- gAGUGCGgCGCCuaUCUcGCUCGGGaGUc -3'
miRNA:   3'- -UCGCGCaGCGGcgGGA-CGAGCCC-CAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.