miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8958 5' -52.3 NC_002512.2 + 226021 0.67 0.993454
Target:  5'- ---aCUCCGAgGAcgacguccgcuccGU-CUACGACUGCg -3'
miRNA:   3'- aggaGAGGCUgCU-------------CAuGAUGCUGACG- -5'
8958 5' -52.3 NC_002512.2 + 225872 0.69 0.964575
Target:  5'- gUCUCUCCGACGcGacucCUGCGAC-GCc -3'
miRNA:   3'- aGGAGAGGCUGCuCau--GAUGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 221867 0.72 0.915376
Target:  5'- aCCUCUCgGAgCGGGUGggGCGAguuCUGCu -3'
miRNA:   3'- aGGAGAGgCU-GCUCAUgaUGCU---GACG- -5'
8958 5' -52.3 NC_002512.2 + 211222 1.14 0.005859
Target:  5'- uUCCUCUCCGACGAGUACUACGACUGCg -3'
miRNA:   3'- -AGGAGAGGCUGCUCAUGAUGCUGACG- -5'
8958 5' -52.3 NC_002512.2 + 210607 0.69 0.975962
Target:  5'- gUCCUCUCCGAUcaccuGGUccgGCUGgGcaACUGCg -3'
miRNA:   3'- -AGGAGAGGCUGc----UCA---UGAUgC--UGACG- -5'
8958 5' -52.3 NC_002512.2 + 209625 0.69 0.970663
Target:  5'- aCCUgCggCCgGACGAGgacgACgACGGCUGCg -3'
miRNA:   3'- aGGA-Ga-GG-CUGCUCa---UGaUGCUGACG- -5'
8958 5' -52.3 NC_002512.2 + 207588 0.73 0.857742
Target:  5'- cCCUCUCCcuggccugcgacggcGGCGGcUGCUGCGGCgGCg -3'
miRNA:   3'- aGGAGAGG---------------CUGCUcAUGAUGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 205132 0.71 0.931545
Target:  5'- uUCgUCUCCGACGGGaagACggucACG-CUGCc -3'
miRNA:   3'- -AGgAGAGGCUGCUCa--UGa---UGCuGACG- -5'
8958 5' -52.3 NC_002512.2 + 204012 0.66 0.996405
Target:  5'- gCCUCUUCGGCuucGUGCgggcCGACgGCg -3'
miRNA:   3'- aGGAGAGGCUGcu-CAUGau--GCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 201674 0.71 0.936469
Target:  5'- uUCCuUCUUCGGCGAGg---GCGGCcGCg -3'
miRNA:   3'- -AGG-AGAGGCUGCUCaugaUGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 200944 0.66 0.99439
Target:  5'- aUCUUCUgcgCCGuCGAGUGgUACGGCa-- -3'
miRNA:   3'- -AGGAGA---GGCuGCUCAUgAUGCUGacg -5'
8958 5' -52.3 NC_002512.2 + 196936 0.66 0.995813
Target:  5'- gUCUC-CCGGCGuGUugUGCcgaauuGCUGCu -3'
miRNA:   3'- aGGAGaGGCUGCuCAugAUGc-----UGACG- -5'
8958 5' -52.3 NC_002512.2 + 196826 0.67 0.991548
Target:  5'- uUCUUCUgCGACGG--GCUGCGGCg-- -3'
miRNA:   3'- -AGGAGAgGCUGCUcaUGAUGCUGacg -5'
8958 5' -52.3 NC_002512.2 + 196752 0.67 0.993544
Target:  5'- -gCUCgaCCGGCGGcGUguacuGCUACGAcCUGCa -3'
miRNA:   3'- agGAGa-GGCUGCU-CA-----UGAUGCU-GACG- -5'
8958 5' -52.3 NC_002512.2 + 193407 0.66 0.996405
Target:  5'- uUCUUCaUCGACGAGgacgACgACGACUacgaGCg -3'
miRNA:   3'- -AGGAGaGGCUGCUCa---UGaUGCUGA----CG- -5'
8958 5' -52.3 NC_002512.2 + 190108 0.69 0.975715
Target:  5'- aCCUCaUCCGGCGcuuccacGGcaGCUGCGuGCUGCu -3'
miRNA:   3'- aGGAG-AGGCUGC-------UCa-UGAUGC-UGACG- -5'
8958 5' -52.3 NC_002512.2 + 189595 0.69 0.970663
Target:  5'- gUCCUCgggaCGACGuucGUGCgcgGCGGCcGCa -3'
miRNA:   3'- -AGGAGag--GCUGCu--CAUGa--UGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 182337 0.67 0.992599
Target:  5'- gCCUC-CCG-CGuGUACUccgcgccCGGCUGCu -3'
miRNA:   3'- aGGAGaGGCuGCuCAUGAu------GCUGACG- -5'
8958 5' -52.3 NC_002512.2 + 181563 0.74 0.813881
Target:  5'- gUCCUCgUUCGugGGGUccguCUGCGGCgGCa -3'
miRNA:   3'- -AGGAG-AGGCugCUCAu---GAUGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 179833 0.67 0.988398
Target:  5'- cCCUCUCCGucagcaccagcccccGCGuGUGCgcgcccaccgucacgACGACgUGCa -3'
miRNA:   3'- aGGAGAGGC---------------UGCuCAUGa--------------UGCUG-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.