Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8958 | 5' | -52.3 | NC_002512.2 | + | 179833 | 0.67 | 0.988398 |
Target: 5'- cCCUCUCCGucagcaccagcccccGCGuGUGCgcgcccaccgucacgACGACgUGCa -3' miRNA: 3'- aGGAGAGGC---------------UGCuCAUGa--------------UGCUG-ACG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 149876 | 0.67 | 0.989092 |
Target: 5'- gCCUCgUCCGGCuccgGCUGCcGCUGCc -3' miRNA: 3'- aGGAG-AGGCUGcucaUGAUGcUGACG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 115983 | 0.67 | 0.991548 |
Target: 5'- gCCUCgUCGACGucuuCUGCGcCUGCa -3' miRNA: 3'- aGGAGaGGCUGCucauGAUGCuGACG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 115062 | 0.67 | 0.990381 |
Target: 5'- -gCUCUUCucCGAGUACUugGACa-- -3' miRNA: 3'- agGAGAGGcuGCUCAUGAugCUGacg -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 54898 | 0.67 | 0.989092 |
Target: 5'- aUCCUg-CCGAaggaGGUGCUGCG-CUGCc -3' miRNA: 3'- -AGGAgaGGCUgc--UCAUGAUGCuGACG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 40638 | 0.67 | 0.989092 |
Target: 5'- aCCUCUccCCGACGGugACguccGCGACgGCg -3' miRNA: 3'- aGGAGA--GGCUGCUcaUGa---UGCUGaCG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 116109 | 0.67 | 0.989092 |
Target: 5'- aCCUCaCCGugccCGAGaucgACGACUGCg -3' miRNA: 3'- aGGAGaGGCu---GCUCaugaUGCUGACG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 124325 | 0.68 | 0.987672 |
Target: 5'- gCCg---CGGCGGacGUGCUGCGGCUGUa -3' miRNA: 3'- aGGagagGCUGCU--CAUGAUGCUGACG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 138151 | 0.68 | 0.982352 |
Target: 5'- uUCUUCgggCUGACGAacuGUccgcacccgccggGCUGCGugUGCa -3' miRNA: 3'- -AGGAGa--GGCUGCU---CA-------------UGAUGCugACG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 3357 | 0.68 | 0.982547 |
Target: 5'- uUCCUC-CCGAuCGAGg---ACGGCgGCa -3' miRNA: 3'- -AGGAGaGGCU-GCUCaugaUGCUGaCG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 150025 | 0.68 | 0.980525 |
Target: 5'- uUCCUcCUCCGAggaCGAGgggGCcggggACGACgggGCg -3' miRNA: 3'- -AGGA-GAGGCU---GCUCa--UGa----UGCUGa--CG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 128848 | 0.69 | 0.967416 |
Target: 5'- aCCgCUCgGGCGccgcgcgggcccuGGUGCUGCGcCUGCu -3' miRNA: 3'- aGGaGAGgCUGC-------------UCAUGAUGCuGACG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 209625 | 0.69 | 0.970663 |
Target: 5'- aCCUgCggCCgGACGAGgacgACgACGGCUGCg -3' miRNA: 3'- aGGA-Ga-GG-CUGCUCa---UGaUGCUGACG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 189595 | 0.69 | 0.970663 |
Target: 5'- gUCCUCgggaCGACGuucGUGCgcgGCGGCcGCa -3' miRNA: 3'- -AGGAGag--GCUGCu--CAUGa--UGCUGaCG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 145681 | 0.69 | 0.970663 |
Target: 5'- gCCUgUCCgcgGACGAGUgGCUGCGccGCUGg -3' miRNA: 3'- aGGAgAGG---CUGCUCA-UGAUGC--UGACg -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 161829 | 0.69 | 0.967416 |
Target: 5'- cCCUCugcUCCGACGAG-GCUuccggacACGGCgucgGCg -3' miRNA: 3'- aGGAG---AGGCUGCUCaUGA-------UGCUGa---CG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 155973 | 0.69 | 0.967721 |
Target: 5'- gUUUCUCCGAC-AGcGCUugGACcGCg -3' miRNA: 3'- aGGAGAGGCUGcUCaUGAugCUGaCG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 65082 | 0.69 | 0.978332 |
Target: 5'- -gCUCUCCagucccgucGCGAGcGCUugGugUGCa -3' miRNA: 3'- agGAGAGGc--------UGCUCaUGAugCugACG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 190108 | 0.69 | 0.975715 |
Target: 5'- aCCUCaUCCGGCGcuuccacGGcaGCUGCGuGCUGCu -3' miRNA: 3'- aGGAG-AGGCUGC-------UCa-UGAUGC-UGACG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 210607 | 0.69 | 0.975962 |
Target: 5'- gUCCUCUCCGAUcaccuGGUccgGCUGgGcaACUGCg -3' miRNA: 3'- -AGGAGAGGCUGc----UCA---UGAUgC--UGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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