miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8958 5' -52.3 NC_002512.2 + 155973 0.69 0.967721
Target:  5'- gUUUCUCCGAC-AGcGCUugGACcGCg -3'
miRNA:   3'- aGGAGAGGCUGcUCaUGAugCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 65082 0.69 0.978332
Target:  5'- -gCUCUCCagucccgucGCGAGcGCUugGugUGCa -3'
miRNA:   3'- agGAGAGGc--------UGCUCaUGAugCugACG- -5'
8958 5' -52.3 NC_002512.2 + 3357 0.68 0.982547
Target:  5'- uUCCUC-CCGAuCGAGg---ACGGCgGCa -3'
miRNA:   3'- -AGGAGaGGCU-GCUCaugaUGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 182337 0.67 0.992599
Target:  5'- gCCUC-CCG-CGuGUACUccgcgccCGGCUGCu -3'
miRNA:   3'- aGGAGaGGCuGCuCAUGAu------GCUGACG- -5'
8958 5' -52.3 NC_002512.2 + 196826 0.67 0.991548
Target:  5'- uUCUUCUgCGACGG--GCUGCGGCg-- -3'
miRNA:   3'- -AGGAGAgGCUGCUcaUGAUGCUGacg -5'
8958 5' -52.3 NC_002512.2 + 149876 0.67 0.989092
Target:  5'- gCCUCgUCCGGCuccgGCUGCcGCUGCc -3'
miRNA:   3'- aGGAG-AGGCUGcucaUGAUGcUGACG- -5'
8958 5' -52.3 NC_002512.2 + 179833 0.67 0.988398
Target:  5'- cCCUCUCCGucagcaccagcccccGCGuGUGCgcgcccaccgucacgACGACgUGCa -3'
miRNA:   3'- aGGAGAGGC---------------UGCuCAUGa--------------UGCUG-ACG- -5'
8958 5' -52.3 NC_002512.2 + 124325 0.68 0.987672
Target:  5'- gCCg---CGGCGGacGUGCUGCGGCUGUa -3'
miRNA:   3'- aGGagagGCUGCU--CAUGAUGCUGACG- -5'
8958 5' -52.3 NC_002512.2 + 138151 0.68 0.982352
Target:  5'- uUCUUCgggCUGACGAacuGUccgcacccgccggGCUGCGugUGCa -3'
miRNA:   3'- -AGGAGa--GGCUGCU---CA-------------UGAUGCugACG- -5'
8958 5' -52.3 NC_002512.2 + 150025 0.68 0.980525
Target:  5'- uUCCUcCUCCGAggaCGAGgggGCcggggACGACgggGCg -3'
miRNA:   3'- -AGGA-GAGGCU---GCUCa--UGa----UGCUGa--CG- -5'
8958 5' -52.3 NC_002512.2 + 226021 0.67 0.993454
Target:  5'- ---aCUCCGAgGAcgacguccgcuccGU-CUACGACUGCg -3'
miRNA:   3'- aggaGAGGCUgCU-------------CAuGAUGCUGACG- -5'
8958 5' -52.3 NC_002512.2 + 196752 0.67 0.993544
Target:  5'- -gCUCgaCCGGCGGcGUguacuGCUACGAcCUGCa -3'
miRNA:   3'- agGAGa-GGCUGCU-CA-----UGAUGCU-GACG- -5'
8958 5' -52.3 NC_002512.2 + 200944 0.66 0.99439
Target:  5'- aUCUUCUgcgCCGuCGAGUGgUACGGCa-- -3'
miRNA:   3'- -AGGAGA---GGCuGCUCAUgAUGCUGacg -5'
8958 5' -52.3 NC_002512.2 + 149405 0.66 0.995813
Target:  5'- cUCCUCgacgggCCG-CGAGgggACcGCGGCggggGCg -3'
miRNA:   3'- -AGGAGa-----GGCuGCUCa--UGaUGCUGa---CG- -5'
8958 5' -52.3 NC_002512.2 + 173060 0.66 0.995813
Target:  5'- aUCCUCUgCGACa---ACUGCGgacACUGCc -3'
miRNA:   3'- -AGGAGAgGCUGcucaUGAUGC---UGACG- -5'
8958 5' -52.3 NC_002512.2 + 114240 0.66 0.995813
Target:  5'- gUCCUCaUCGACGGcgAC--CGGCUGCg -3'
miRNA:   3'- -AGGAGaGGCUGCUcaUGauGCUGACG- -5'
8958 5' -52.3 NC_002512.2 + 99041 0.66 0.996405
Target:  5'- gCCUCgcCCGACcgccGGUACU-CGACcGCg -3'
miRNA:   3'- aGGAGa-GGCUGc---UCAUGAuGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 165815 0.66 0.996405
Target:  5'- aCCUUcCCGucCGAGUACgagAUG-CUGCu -3'
miRNA:   3'- aGGAGaGGCu-GCUCAUGa--UGCuGACG- -5'
8958 5' -52.3 NC_002512.2 + 204012 0.66 0.996405
Target:  5'- gCCUCUUCGGCuucGUGCgggcCGACgGCg -3'
miRNA:   3'- aGGAGAGGCUGcu-CAUGau--GCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 211222 1.14 0.005859
Target:  5'- uUCCUCUCCGACGAGUACUACGACUGCg -3'
miRNA:   3'- -AGGAGAGGCUGCUCAUGAUGCUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.