miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8958 5' -52.3 NC_002512.2 + 221867 0.72 0.915376
Target:  5'- aCCUCUCgGAgCGGGUGggGCGAguuCUGCu -3'
miRNA:   3'- aGGAGAGgCU-GCUCAUgaUGCU---GACG- -5'
8958 5' -52.3 NC_002512.2 + 205132 0.71 0.931545
Target:  5'- uUCgUCUCCGACGGGaagACggucACG-CUGCc -3'
miRNA:   3'- -AGgAGAGGCUGCUCa--UGa---UGCuGACG- -5'
8958 5' -52.3 NC_002512.2 + 209625 0.69 0.970663
Target:  5'- aCCUgCggCCgGACGAGgacgACgACGGCUGCg -3'
miRNA:   3'- aGGA-Ga-GG-CUGCUCa---UGaUGCUGACG- -5'
8958 5' -52.3 NC_002512.2 + 211222 1.14 0.005859
Target:  5'- uUCCUCUCCGACGAGUACUACGACUGCg -3'
miRNA:   3'- -AGGAGAGGCUGCUCAUGAUGCUGACG- -5'
8958 5' -52.3 NC_002512.2 + 189595 0.69 0.970663
Target:  5'- gUCCUCgggaCGACGuucGUGCgcgGCGGCcGCa -3'
miRNA:   3'- -AGGAGag--GCUGCu--CAUGa--UGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 105337 0.71 0.941162
Target:  5'- cUCCUCgCCGACGAGguaggaguugGCguagAUGACgGCg -3'
miRNA:   3'- -AGGAGaGGCUGCUCa---------UGa---UGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 207588 0.73 0.857742
Target:  5'- cCCUCUCCcuggccugcgacggcGGCGGcUGCUGCGGCgGCg -3'
miRNA:   3'- aGGAGAGG---------------CUGCUcAUGAUGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 145681 0.69 0.970663
Target:  5'- gCCUgUCCgcgGACGAGUgGCUGCGccGCUGg -3'
miRNA:   3'- aGGAgAGG---CUGCUCA-UGAUGC--UGACg -5'
8958 5' -52.3 NC_002512.2 + 225872 0.69 0.964575
Target:  5'- gUCUCUCCGACGcGacucCUGCGAC-GCc -3'
miRNA:   3'- aGGAGAGGCUGCuCau--GAUGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 201674 0.71 0.936469
Target:  5'- uUCCuUCUUCGGCGAGg---GCGGCcGCg -3'
miRNA:   3'- -AGG-AGAGGCUGCUCaugaUGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 190108 0.69 0.975715
Target:  5'- aCCUCaUCCGGCGcuuccacGGcaGCUGCGuGCUGCu -3'
miRNA:   3'- aGGAG-AGGCUGC-------UCa-UGAUGC-UGACG- -5'
8958 5' -52.3 NC_002512.2 + 145345 0.7 0.953476
Target:  5'- gCCUCgccgcgCCGcccgacgccggcuACGAGgGCUACGACUGg -3'
miRNA:   3'- aGGAGa-----GGC-------------UGCUCaUGAUGCUGACg -5'
8958 5' -52.3 NC_002512.2 + 34832 0.7 0.961221
Target:  5'- aUUCUCUCCGACGcucauaaacGGUcgAC-ACGcACUGCg -3'
miRNA:   3'- -AGGAGAGGCUGC---------UCA--UGaUGC-UGACG- -5'
8958 5' -52.3 NC_002512.2 + 128848 0.69 0.967416
Target:  5'- aCCgCUCgGGCGccgcgcgggcccuGGUGCUGCGcCUGCu -3'
miRNA:   3'- aGGaGAGgCUGC-------------UCAUGAUGCuGACG- -5'
8958 5' -52.3 NC_002512.2 + 161829 0.69 0.967416
Target:  5'- cCCUCugcUCCGACGAG-GCUuccggacACGGCgucgGCg -3'
miRNA:   3'- aGGAG---AGGCUGCUCaUGA-------UGCUGa---CG- -5'
8958 5' -52.3 NC_002512.2 + 115983 0.67 0.991548
Target:  5'- gCCUCgUCGACGucuuCUGCGcCUGCa -3'
miRNA:   3'- aGGAGaGGCUGCucauGAUGCuGACG- -5'
8958 5' -52.3 NC_002512.2 + 128258 0.7 0.957284
Target:  5'- cUCCUCgUCCGACGGGUccgccgucACccagauccucucgUGCGGgUGCa -3'
miRNA:   3'- -AGGAG-AGGCUGCUCA--------UG-------------AUGCUgACG- -5'
8958 5' -52.3 NC_002512.2 + 115062 0.67 0.990381
Target:  5'- -gCUCUUCucCGAGUACUugGACa-- -3'
miRNA:   3'- agGAGAGGcuGCUCAUGAugCUGacg -5'
8958 5' -52.3 NC_002512.2 + 54898 0.67 0.989092
Target:  5'- aUCCUg-CCGAaggaGGUGCUGCG-CUGCc -3'
miRNA:   3'- -AGGAgaGGCUgc--UCAUGAUGCuGACG- -5'
8958 5' -52.3 NC_002512.2 + 40638 0.67 0.989092
Target:  5'- aCCUCUccCCGACGGugACguccGCGACgGCg -3'
miRNA:   3'- aGGAGA--GGCUGCUcaUGa---UGCUGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.