miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8958 5' -52.3 NC_002512.2 + 122172 0.7 0.945624
Target:  5'- aCCUCUgCGACcuGcGCcACGACUGCg -3'
miRNA:   3'- aGGAGAgGCUGcuCaUGaUGCUGACG- -5'
8958 5' -52.3 NC_002512.2 + 124325 0.68 0.987672
Target:  5'- gCCg---CGGCGGacGUGCUGCGGCUGUa -3'
miRNA:   3'- aGGagagGCUGCU--CAUGAUGCUGACG- -5'
8958 5' -52.3 NC_002512.2 + 125867 0.66 0.99439
Target:  5'- cCCUCuggUCCGGCGGGc---ACGGCUGg -3'
miRNA:   3'- aGGAG---AGGCUGCUCaugaUGCUGACg -5'
8958 5' -52.3 NC_002512.2 + 128258 0.7 0.957284
Target:  5'- cUCCUCgUCCGACGGGUccgccgucACccagauccucucgUGCGGgUGCa -3'
miRNA:   3'- -AGGAG-AGGCUGCUCA--------UG-------------AUGCUgACG- -5'
8958 5' -52.3 NC_002512.2 + 128848 0.69 0.967416
Target:  5'- aCCgCUCgGGCGccgcgcgggcccuGGUGCUGCGcCUGCu -3'
miRNA:   3'- aGGaGAGgCUGC-------------UCAUGAUGCuGACG- -5'
8958 5' -52.3 NC_002512.2 + 129373 0.66 0.995144
Target:  5'- cUUCUgUCuCGuGCGGGUGCUcgACGACcGCg -3'
miRNA:   3'- -AGGAgAG-GC-UGCUCAUGA--UGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 138151 0.68 0.982352
Target:  5'- uUCUUCgggCUGACGAacuGUccgcacccgccggGCUGCGugUGCa -3'
miRNA:   3'- -AGGAGa--GGCUGCU---CA-------------UGAUGCugACG- -5'
8958 5' -52.3 NC_002512.2 + 145345 0.7 0.953476
Target:  5'- gCCUCgccgcgCCGcccgacgccggcuACGAGgGCUACGACUGg -3'
miRNA:   3'- aGGAGa-----GGC-------------UGCUCaUGAUGCUGACg -5'
8958 5' -52.3 NC_002512.2 + 145681 0.69 0.970663
Target:  5'- gCCUgUCCgcgGACGAGUgGCUGCGccGCUGg -3'
miRNA:   3'- aGGAgAGG---CUGCUCA-UGAUGC--UGACg -5'
8958 5' -52.3 NC_002512.2 + 149405 0.66 0.995813
Target:  5'- cUCCUCgacgggCCG-CGAGgggACcGCGGCggggGCg -3'
miRNA:   3'- -AGGAGa-----GGCuGCUCa--UGaUGCUGa---CG- -5'
8958 5' -52.3 NC_002512.2 + 149876 0.67 0.989092
Target:  5'- gCCUCgUCCGGCuccgGCUGCcGCUGCc -3'
miRNA:   3'- aGGAG-AGGCUGcucaUGAUGcUGACG- -5'
8958 5' -52.3 NC_002512.2 + 150025 0.68 0.980525
Target:  5'- uUCCUcCUCCGAggaCGAGgggGCcggggACGACgggGCg -3'
miRNA:   3'- -AGGA-GAGGCU---GCUCa--UGa----UGCUGa--CG- -5'
8958 5' -52.3 NC_002512.2 + 155973 0.69 0.967721
Target:  5'- gUUUCUCCGAC-AGcGCUugGACcGCg -3'
miRNA:   3'- aGGAGAGGCUGcUCaUGAugCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 156991 0.66 0.996926
Target:  5'- aUCCUCUCCc-CGGaUGCUGCGGa-GCa -3'
miRNA:   3'- -AGGAGAGGcuGCUcAUGAUGCUgaCG- -5'
8958 5' -52.3 NC_002512.2 + 161829 0.69 0.967416
Target:  5'- cCCUCugcUCCGACGAG-GCUuccggacACGGCgucgGCg -3'
miRNA:   3'- aGGAG---AGGCUGCUCaUGA-------UGCUGa---CG- -5'
8958 5' -52.3 NC_002512.2 + 165815 0.66 0.996405
Target:  5'- aCCUUcCCGucCGAGUACgagAUG-CUGCu -3'
miRNA:   3'- aGGAGaGGCu-GCUCAUGa--UGCuGACG- -5'
8958 5' -52.3 NC_002512.2 + 172575 0.76 0.750265
Target:  5'- uUCCUCcgcgCCcGCGAGUACgagacCGGCUGCg -3'
miRNA:   3'- -AGGAGa---GGcUGCUCAUGau---GCUGACG- -5'
8958 5' -52.3 NC_002512.2 + 173060 0.66 0.995813
Target:  5'- aUCCUCUgCGACa---ACUGCGgacACUGCc -3'
miRNA:   3'- -AGGAGAgGCUGcucaUGAUGC---UGACG- -5'
8958 5' -52.3 NC_002512.2 + 179833 0.67 0.988398
Target:  5'- cCCUCUCCGucagcaccagcccccGCGuGUGCgcgcccaccgucacgACGACgUGCa -3'
miRNA:   3'- aGGAGAGGC---------------UGCuCAUGa--------------UGCUG-ACG- -5'
8958 5' -52.3 NC_002512.2 + 181563 0.74 0.813881
Target:  5'- gUCCUCgUUCGugGGGUccguCUGCGGCgGCa -3'
miRNA:   3'- -AGGAG-AGGCugCUCAu---GAUGCUGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.