miRNA display CGI


Results 61 - 80 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 121934 0.7 0.447366
Target:  5'- gGCGGCgGUCCcggaCCCGCggcgaugAUgUUCGCUCa -3'
miRNA:   3'- -CGCCGgCAGG----GGGCGa------UGgAGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 155239 0.7 0.447366
Target:  5'- cGCGGCCGUCCcgCCCGUcgcgGCgUCgacgGCUCg -3'
miRNA:   3'- -CGCCGGCAGG--GGGCGa---UGgAGg---CGAG- -5'
8959 3' -63.6 NC_002512.2 + 83170 0.7 0.447366
Target:  5'- cGCGGCCGcCgCCCCGCcgucgUCUCCGUc- -3'
miRNA:   3'- -CGCCGGCaG-GGGGCGau---GGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 71028 0.7 0.448207
Target:  5'- cCGGCCGgucgacgacgacgucCCCCCGCUcCC-CCGCgUCa -3'
miRNA:   3'- cGCCGGCa--------------GGGGGCGAuGGaGGCG-AG- -5'
8959 3' -63.6 NC_002512.2 + 200514 0.7 0.454972
Target:  5'- cGgGGCuCGUCCUCaCGCUGCUguccgugUCCGuCUCg -3'
miRNA:   3'- -CgCCG-GCAGGGG-GCGAUGG-------AGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 155269 0.7 0.455822
Target:  5'- cGCGGCgGUCUCgCGCUcCgCUCCGgUCc -3'
miRNA:   3'- -CGCCGgCAGGGgGCGAuG-GAGGCgAG- -5'
8959 3' -63.6 NC_002512.2 + 184770 0.7 0.456672
Target:  5'- cGUGGUCGUCgaCCCCGaggacguggcccggGCCUCCGCg- -3'
miRNA:   3'- -CGCCGGCAG--GGGGCga------------UGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 94301 0.7 0.456672
Target:  5'- aGCGGUCGUCCaCCCGgUugCgccccggcgcgaaaCGCUCg -3'
miRNA:   3'- -CGCCGGCAGG-GGGCgAugGag------------GCGAG- -5'
8959 3' -63.6 NC_002512.2 + 85582 0.7 0.463506
Target:  5'- aGCGGCCGggagagcgCgUCCGCguucgggUGCCUCCGC-Cg -3'
miRNA:   3'- -CGCCGGCa-------GgGGGCG-------AUGGAGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 120262 0.7 0.464364
Target:  5'- uUGGCCGUCUUgCGC-ACCUCCGaguUCa -3'
miRNA:   3'- cGCCGGCAGGGgGCGaUGGAGGCg--AG- -5'
8959 3' -63.6 NC_002512.2 + 126825 0.7 0.464364
Target:  5'- uGCGagguGCCGUUCCCCGCgcuccUGCCcCCGgUCu -3'
miRNA:   3'- -CGC----CGGCAGGGGGCG-----AUGGaGGCgAG- -5'
8959 3' -63.6 NC_002512.2 + 86156 0.7 0.464364
Target:  5'- cGCGGCCG-CCUCCGagGCC-CUGCUg -3'
miRNA:   3'- -CGCCGGCaGGGGGCgaUGGaGGCGAg -5'
8959 3' -63.6 NC_002512.2 + 219438 0.7 0.464364
Target:  5'- gGCGGCC-UCCUCCGC-GCCcCCGUg- -3'
miRNA:   3'- -CGCCGGcAGGGGGCGaUGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 148521 0.7 0.464364
Target:  5'- gGCGGCCG-CCgCCCGCc-CCggCCGCg- -3'
miRNA:   3'- -CGCCGGCaGG-GGGCGauGGa-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 137231 0.7 0.471257
Target:  5'- gGCGGCCGUCCCggauCCGCgcgggucccggcGCCggcggCCGC-Cg -3'
miRNA:   3'- -CGCCGGCAGGG----GGCGa-----------UGGa----GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 120841 0.7 0.472988
Target:  5'- cCGGUCGUCCCCCGa-GCCcccCCGgUCc -3'
miRNA:   3'- cGCCGGCAGGGGGCgaUGGa--GGCgAG- -5'
8959 3' -63.6 NC_002512.2 + 211799 0.7 0.473855
Target:  5'- gGgGGCCGUCCCgCCGCggcgcaccuauuucgACUUCCuggaccccggGCUCu -3'
miRNA:   3'- -CgCCGGCAGGG-GGCGa--------------UGGAGG----------CGAG- -5'
8959 3' -63.6 NC_002512.2 + 139879 0.69 0.481692
Target:  5'- uGCGGgaUCGUgCUCCGCUACCUgCUGCa- -3'
miRNA:   3'- -CGCC--GGCAgGGGGCGAUGGA-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 215021 0.69 0.481692
Target:  5'- --cGCCuGUCCCgCGaCUACCUCUGCUg -3'
miRNA:   3'- cgcCGG-CAGGGgGC-GAUGGAGGCGAg -5'
8959 3' -63.6 NC_002512.2 + 79348 0.69 0.481692
Target:  5'- cGCGGCggCGUaCCCUCGCgGCCgCCGCg- -3'
miRNA:   3'- -CGCCG--GCA-GGGGGCGaUGGaGGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.