Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8960 | 3' | -56.6 | NC_002512.2 | + | 10808 | 0.7 | 0.747045 |
Target: 5'- -cGUCCa-UGAgCACGUCGAGCUCGAa -3' miRNA: 3'- cuCGGGaaGCUgGUGCAGCUCGAGUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 13558 | 0.69 | 0.827454 |
Target: 5'- cGAGCCgc-CGACCGCGUCgGGGCcgCAGa -3' miRNA: 3'- -CUCGGgaaGCUGGUGCAG-CUCGa-GUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 15701 | 0.66 | 0.934043 |
Target: 5'- cGGGUCCUccuccgCGACgAUGaCGGGCUCGAc -3' miRNA: 3'- -CUCGGGAa-----GCUGgUGCaGCUCGAGUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 18930 | 0.66 | 0.929036 |
Target: 5'- aGGGCCCggaCGACCuCGUUGGcCUCGGg -3' miRNA: 3'- -CUCGGGaa-GCUGGuGCAGCUcGAGUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 21653 | 0.68 | 0.866533 |
Target: 5'- cGGGCCUUcuccUCGuCCAUGUCgGAGaCUCAAa -3' miRNA: 3'- -CUCGGGA----AGCuGGUGCAG-CUC-GAGUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 21970 | 0.7 | 0.775028 |
Target: 5'- cGGGCCCgUUCGAgcuCCGCGUCGAGg---- -3' miRNA: 3'- -CUCGGG-AAGCU---GGUGCAGCUCgaguu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 24909 | 0.68 | 0.851468 |
Target: 5'- cGGUCCccgUCGcccGCgGCGUCGGGCUCGg -3' miRNA: 3'- cUCGGGa--AGC---UGgUGCAGCUCGAGUu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 26523 | 0.66 | 0.918333 |
Target: 5'- uGAGCaaccgCGGCCugGUCGgcAGCUCGc -3' miRNA: 3'- -CUCGggaa-GCUGGugCAGC--UCGAGUu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 31343 | 0.67 | 0.906713 |
Target: 5'- -cGCCCUggcCGGCUACGaccaCGAGCUgGAg -3' miRNA: 3'- cuCGGGAa--GCUGGUGCa---GCUCGAgUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 36436 | 0.68 | 0.844436 |
Target: 5'- aGGGCCCgcucccgccaccggCGGCCGCGgUCGcGCUCGu -3' miRNA: 3'- -CUCGGGaa------------GCUGGUGC-AGCuCGAGUu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 39811 | 0.69 | 0.827454 |
Target: 5'- cGAGCCCgcugacCGGCCGCGgCcAGCUCGu -3' miRNA: 3'- -CUCGGGaa----GCUGGUGCaGcUCGAGUu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 64318 | 0.67 | 0.90911 |
Target: 5'- -uGCCCggCcACCACGUCGccgaccuggcaguccAGCUCGAu -3' miRNA: 3'- cuCGGGaaGcUGGUGCAGC---------------UCGAGUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 72853 | 0.66 | 0.912637 |
Target: 5'- cGGGUCCUcgcUCcgGGCCGCGUCGccguugucgcggGGCUCGGg -3' miRNA: 3'- -CUCGGGA---AG--CUGGUGCAGC------------UCGAGUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 84497 | 0.66 | 0.918333 |
Target: 5'- gGAcCCCggaCG-CCGCGUCGGGCUCc- -3' miRNA: 3'- -CUcGGGaa-GCuGGUGCAGCUCGAGuu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 89314 | 0.73 | 0.608655 |
Target: 5'- -cGCCCUccgucUCGACCAgGUCGgagAGCUCGu -3' miRNA: 3'- cuCGGGA-----AGCUGGUgCAGC---UCGAGUu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 94622 | 0.66 | 0.934043 |
Target: 5'- cGGCCCa--GGCCuCGUCGAGCgCGg -3' miRNA: 3'- cUCGGGaagCUGGuGCAGCUCGaGUu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 98467 | 0.66 | 0.918333 |
Target: 5'- gGAGCCCgccgUC-ACCGUGUCGcAGCUCu- -3' miRNA: 3'- -CUCGGGa---AGcUGGUGCAGC-UCGAGuu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 99266 | 0.68 | 0.851468 |
Target: 5'- cGAGUCCUUCugUCGCGcCGGGCUCu- -3' miRNA: 3'- -CUCGGGAAGcuGGUGCaGCUCGAGuu -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 101473 | 0.66 | 0.923799 |
Target: 5'- aGGGCuCCggCGACCcCGccacCGGGCUCGAg -3' miRNA: 3'- -CUCG-GGaaGCUGGuGCa---GCUCGAGUU- -5' |
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8960 | 3' | -56.6 | NC_002512.2 | + | 101708 | 0.68 | 0.866533 |
Target: 5'- cGGCCCgcucggCGACCuCGUCcccGGGCUCGu -3' miRNA: 3'- cUCGGGaa----GCUGGuGCAG---CUCGAGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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