Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8961 | 3' | -58.4 | NC_002512.2 | + | 210639 | 1.04 | 0.004965 |
Target: 5'- cUGCGAGUACGCCUCGCGUCUCGGCUUc -3' miRNA: 3'- -ACGCUCAUGCGGAGCGCAGAGCCGAA- -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 172660 | 0.83 | 0.136862 |
Target: 5'- cUGCGGGgACGCC-CGCGUCUCGGCc- -3' miRNA: 3'- -ACGCUCaUGCGGaGCGCAGAGCCGaa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 103458 | 0.76 | 0.357928 |
Target: 5'- cGCGGGUccgaggacGCGgCUCGgGUCUCGGCg- -3' miRNA: 3'- aCGCUCA--------UGCgGAGCgCAGAGCCGaa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 211284 | 0.75 | 0.397571 |
Target: 5'- uUGCGAGUGCGCCgagUGCGgcaugCGGCg- -3' miRNA: 3'- -ACGCUCAUGCGGa--GCGCaga--GCCGaa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 123478 | 0.74 | 0.46294 |
Target: 5'- cGCGGuGUGCGUCUCGCGgguccagggggugCUCGGCc- -3' miRNA: 3'- aCGCU-CAUGCGGAGCGCa------------GAGCCGaa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 106677 | 0.74 | 0.466536 |
Target: 5'- aGCGucGGUACGCgUCGCGgugUUCGGCg- -3' miRNA: 3'- aCGC--UCAUGCGgAGCGCa--GAGCCGaa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 116744 | 0.71 | 0.639178 |
Target: 5'- gGCGAGgccgGCGCCccgcgCGCGUCUCcgaggagaGGCa- -3' miRNA: 3'- aCGCUCa---UGCGGa----GCGCAGAG--------CCGaa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 182635 | 0.7 | 0.678603 |
Target: 5'- cGCGAucuucuccaGCGCCU-GCGUCUCGGCc- -3' miRNA: 3'- aCGCUca-------UGCGGAgCGCAGAGCCGaa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 114421 | 0.7 | 0.667797 |
Target: 5'- cUGCGAGcucUGCGCCagccgguUCGCGUgaUCGGCg- -3' miRNA: 3'- -ACGCUC---AUGCGG-------AGCGCAg-AGCCGaa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 111099 | 0.69 | 0.745908 |
Target: 5'- aUGCGGGUGCGCacccgCGCGUaguccCUCuGCUUg -3' miRNA: 3'- -ACGCUCAUGCGga---GCGCA-----GAGcCGAA- -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 226776 | 0.69 | 0.736506 |
Target: 5'- gGCGAGgACGUCUCGgGcgacgccguggUCUCGGCc- -3' miRNA: 3'- aCGCUCaUGCGGAGCgC-----------AGAGCCGaa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 155630 | 0.69 | 0.745908 |
Target: 5'- gUGCGAGgagagccggcgGCGCUUCgGCGUC-CGGCc- -3' miRNA: 3'- -ACGCUCa----------UGCGGAG-CGCAGaGCCGaa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 228047 | 0.69 | 0.707824 |
Target: 5'- gGCGAG-ACGCC-CGCGga-CGGCUg -3' miRNA: 3'- aCGCUCaUGCGGaGCGCagaGCCGAa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 77822 | 0.69 | 0.717455 |
Target: 5'- aGCGAGUACGUgCUCGaCGcCgggCGGCa- -3' miRNA: 3'- aCGCUCAUGCG-GAGC-GCaGa--GCCGaa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 79606 | 0.69 | 0.707824 |
Target: 5'- cGCGGGcggcaGCGCCgggUCGCGguaCUCGGCg- -3' miRNA: 3'- aCGCUCa----UGCGG---AGCGCa--GAGCCGaa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 214641 | 0.69 | 0.754291 |
Target: 5'- cGCGGGc-CGCCUCGCaGUCUcuccuccCGGCg- -3' miRNA: 3'- aCGCUCauGCGGAGCG-CAGA-------GCCGaa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 74657 | 0.68 | 0.773523 |
Target: 5'- gGCGGG-ACgGCCgcgggCGCGUUUCGGUUc -3' miRNA: 3'- aCGCUCaUG-CGGa----GCGCAGAGCCGAa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 221844 | 0.68 | 0.782503 |
Target: 5'- cGCGGGgGCGCCUCGgGaccgggaccUCUCGGa-- -3' miRNA: 3'- aCGCUCaUGCGGAGCgC---------AGAGCCgaa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 82356 | 0.68 | 0.800078 |
Target: 5'- aGCGuuucGCGCCUCGCGccgggaUCGGCg- -3' miRNA: 3'- aCGCuca-UGCGGAGCGCag----AGCCGaa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 200842 | 0.68 | 0.764425 |
Target: 5'- aGCGGGgGCGCggCGCGUCUCuGCc- -3' miRNA: 3'- aCGCUCaUGCGgaGCGCAGAGcCGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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