Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8961 | 3' | -58.4 | NC_002512.2 | + | 221476 | 0.67 | 0.849163 |
Target: 5'- cGCG-GUGCGCguucCUgGCG-CUCGGCg- -3' miRNA: 3'- aCGCuCAUGCG----GAgCGCaGAGCCGaa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 200842 | 0.68 | 0.764425 |
Target: 5'- aGCGGGgGCGCggCGCGUCUCuGCc- -3' miRNA: 3'- aCGCUCaUGCGgaGCGCAGAGcCGaa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 210639 | 1.04 | 0.004965 |
Target: 5'- cUGCGAGUACGCCUCGCGUCUCGGCUUc -3' miRNA: 3'- -ACGCUCAUGCGGAGCGCAGAGCCGAA- -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 219363 | 0.66 | 0.891672 |
Target: 5'- cGCGAGguccUGCGCCUCuGCuccCUgGGCUg -3' miRNA: 3'- aCGCUC----AUGCGGAG-CGca-GAgCCGAa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 193252 | 0.66 | 0.891672 |
Target: 5'- gGCGGuucUACGCCUgCGCGcccugcCUCGGCg- -3' miRNA: 3'- aCGCUc--AUGCGGA-GCGCa-----GAGCCGaa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 207872 | 0.66 | 0.891672 |
Target: 5'- aGCGAGUccggggACGgCUUcugGCGcUCUCGGCg- -3' miRNA: 3'- aCGCUCA------UGCgGAG---CGC-AGAGCCGaa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 193898 | 0.66 | 0.885095 |
Target: 5'- aGCGGGU-CGCCgcggucggcggaUCGCGUCcCGGaCUc -3' miRNA: 3'- aCGCUCAuGCGG------------AGCGCAGaGCC-GAa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 196256 | 0.66 | 0.878308 |
Target: 5'- cGCGc--GCGCCUCuCGcCUCGGCg- -3' miRNA: 3'- aCGCucaUGCGGAGcGCaGAGCCGaa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 128260 | 0.66 | 0.871317 |
Target: 5'- -uCGAGcgGCGaCUCGCGUCcCGGCg- -3' miRNA: 3'- acGCUCa-UGCgGAGCGCAGaGCCGaa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 74657 | 0.68 | 0.773523 |
Target: 5'- gGCGGG-ACgGCCgcgggCGCGUUUCGGUUc -3' miRNA: 3'- aCGCUCaUG-CGGa----GCGCAGAGCCGAa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 82356 | 0.68 | 0.800078 |
Target: 5'- aGCGuuucGCGCCUCGCGccgggaUCGGCg- -3' miRNA: 3'- aCGCuca-UGCGGAGCGCag----AGCCGaa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 128691 | 0.67 | 0.808657 |
Target: 5'- gGCGA--ACGCCg-GCGUCUCGGaCa- -3' miRNA: 3'- aCGCUcaUGCGGagCGCAGAGCC-Gaa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 173616 | 0.67 | 0.833466 |
Target: 5'- aGCGGGaGCGCCUCcgccGCGg--CGGCg- -3' miRNA: 3'- aCGCUCaUGCGGAG----CGCagaGCCGaa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 221844 | 0.68 | 0.782503 |
Target: 5'- cGCGGGgGCGCCUCGgGaccgggaccUCUCGGa-- -3' miRNA: 3'- aCGCUCaUGCGGAGCgC---------AGAGCCgaa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 193178 | 0.67 | 0.825358 |
Target: 5'- cGCGAugGU-CGCCUucuucuucgacCGCGUCuUCGGCUc -3' miRNA: 3'- aCGCU--CAuGCGGA-----------GCGCAG-AGCCGAa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 170210 | 0.67 | 0.817086 |
Target: 5'- aGCGGGUGCuCCUCGCGgugCgcgaagcagCGGUUg -3' miRNA: 3'- aCGCUCAUGcGGAGCGCa--Ga--------GCCGAa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 189912 | 0.68 | 0.773523 |
Target: 5'- gGCGAGgacgGCGgCUcCG-GUCUCGGCg- -3' miRNA: 3'- aCGCUCa---UGCgGA-GCgCAGAGCCGaa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 214641 | 0.69 | 0.754291 |
Target: 5'- cGCGGGc-CGCCUCGCaGUCUcuccuccCGGCg- -3' miRNA: 3'- aCGCUCauGCGGAGCG-CAGA-------GCCGaa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 82120 | 0.67 | 0.825358 |
Target: 5'- cGCGAGUcgggacggccGCGCUggCGCacGUCUCGGUc- -3' miRNA: 3'- aCGCUCA----------UGCGGa-GCG--CAGAGCCGaa -5' |
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8961 | 3' | -58.4 | NC_002512.2 | + | 186004 | 0.67 | 0.822893 |
Target: 5'- gGUGGGUcguccggcaccuggACGCCugcgUCGCG-CUCGGCa- -3' miRNA: 3'- aCGCUCA--------------UGCGG----AGCGCaGAGCCGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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