miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8962 5' -55.7 NC_002512.2 + 209783 1.12 0.002802
Target:  5'- gGCAAGCCCGGCGGCUACUUCAUGGUCg -3'
miRNA:   3'- -CGUUCGGGCCGCCGAUGAAGUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 107623 0.8 0.291816
Target:  5'- aGCGAGUCgGGCGGCUGCc-CGUGGUUc -3'
miRNA:   3'- -CGUUCGGgCCGCCGAUGaaGUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 34848 0.79 0.349109
Target:  5'- cGCGGGCCgCGGCGGCUuCUUCGUcgccGUCg -3'
miRNA:   3'- -CGUUCGG-GCCGCCGAuGAAGUAc---CAG- -5'
8962 5' -55.7 NC_002512.2 + 129654 0.77 0.41398
Target:  5'- aGCGGGCCCGucaggagaucaGCGGCU-CUUaCGUGGUCc -3'
miRNA:   3'- -CGUUCGGGC-----------CGCCGAuGAA-GUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 156261 0.77 0.458105
Target:  5'- aCGAGCCCGGCGGCgccuucgACUUCuccgaGUGGcCc -3'
miRNA:   3'- cGUUCGGGCCGCCGa------UGAAG-----UACCaG- -5'
8962 5' -55.7 NC_002512.2 + 217581 0.75 0.562927
Target:  5'- aGCcGGUCCGGCGGCgccGCcUCGggGGUCg -3'
miRNA:   3'- -CGuUCGGGCCGCCGa--UGaAGUa-CCAG- -5'
8962 5' -55.7 NC_002512.2 + 188561 0.74 0.57284
Target:  5'- gGC-AGCuCCGGCGGCgacgACUUCucGGUCu -3'
miRNA:   3'- -CGuUCG-GGCCGCCGa---UGAAGuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 221071 0.73 0.622882
Target:  5'- cCAAGCuCCGGCGGCggaACggCGUGGg- -3'
miRNA:   3'- cGUUCG-GGCCGCCGa--UGaaGUACCag -5'
8962 5' -55.7 NC_002512.2 + 101966 0.73 0.642996
Target:  5'- cGCGGGCCCGcCGGCggGCU-CGUGGcCg -3'
miRNA:   3'- -CGUUCGGGCcGCCGa-UGAaGUACCaG- -5'
8962 5' -55.7 NC_002512.2 + 128010 0.73 0.653044
Target:  5'- cGCuuucGCCC-GCGGCUGCUgcggCcgGGUCg -3'
miRNA:   3'- -CGuu--CGGGcCGCCGAUGAa---GuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 83103 0.72 0.71271
Target:  5'- cCGGGUCCGGCGGUccgGCgUCGgucgGGUCg -3'
miRNA:   3'- cGUUCGGGCCGCCGa--UGaAGUa---CCAG- -5'
8962 5' -55.7 NC_002512.2 + 200720 0.72 0.722472
Target:  5'- gGCugccGCCCGGCGGUccgaacgggucgUACcgggCGUGGUCg -3'
miRNA:   3'- -CGuu--CGGGCCGCCG------------AUGaa--GUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 81248 0.71 0.73216
Target:  5'- -gGAGUCCGGCGGCcUGCggUUGaGGUCg -3'
miRNA:   3'- cgUUCGGGCCGCCG-AUGa-AGUaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 7321 0.71 0.73216
Target:  5'- gGCGGGCCgCGGCGGg-ACggUcgGGUCg -3'
miRNA:   3'- -CGUUCGG-GCCGCCgaUGaaGuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 196178 0.71 0.751275
Target:  5'- gGCGAGCCCgaGGgGGCgACggCcgGGUCc -3'
miRNA:   3'- -CGUUCGGG--CCgCCGaUGaaGuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 118792 0.71 0.751275
Target:  5'- ---cGCCgGGCGGgaGCUgugggcccccgUCGUGGUCg -3'
miRNA:   3'- cguuCGGgCCGCCgaUGA-----------AGUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 126359 0.7 0.78822
Target:  5'- ---cGgCCGGCGGCaACUUCcugcUGGUCa -3'
miRNA:   3'- cguuCgGGCCGCCGaUGAAGu---ACCAG- -5'
8962 5' -55.7 NC_002512.2 + 42609 0.7 0.797138
Target:  5'- -gAAGCCCGGgGGC-ACUUCGaGG-Cg -3'
miRNA:   3'- cgUUCGGGCCgCCGaUGAAGUaCCaG- -5'
8962 5' -55.7 NC_002512.2 + 157144 0.7 0.797138
Target:  5'- gGCGGGCCCggggcgGGCGGCgggccggGCggCGUGGg- -3'
miRNA:   3'- -CGUUCGGG------CCGCCGa------UGaaGUACCag -5'
8962 5' -55.7 NC_002512.2 + 208250 0.7 0.822997
Target:  5'- -aAGGCCCGGUccugggaacGCUACaccacgUUCAUGGUCa -3'
miRNA:   3'- cgUUCGGGCCGc--------CGAUG------AAGUACCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.