Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8962 | 5' | -55.7 | NC_002512.2 | + | 128407 | 0.7 | 0.822997 |
Target: 5'- uCGAGCCCGGUGGCgg------GGUCg -3' miRNA: 3'- cGUUCGGGCCGCCGaugaaguaCCAG- -5' |
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8962 | 5' | -55.7 | NC_002512.2 | + | 208250 | 0.7 | 0.822997 |
Target: 5'- -aAGGCCCGGUccugggaacGCUACaccacgUUCAUGGUCa -3' miRNA: 3'- cgUUCGGGCCGc--------CGAUG------AAGUACCAG- -5' |
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8962 | 5' | -55.7 | NC_002512.2 | + | 123056 | 0.7 | 0.822997 |
Target: 5'- uGCAcccuGGCCCGGCuGCUgugggaggGCUUCA-GGUUc -3' miRNA: 3'- -CGU----UCGGGCCGcCGA--------UGAAGUaCCAG- -5' |
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8962 | 5' | -55.7 | NC_002512.2 | + | 207931 | 0.69 | 0.84735 |
Target: 5'- aCGGGCCCGGUGG-UGCU-CG-GGUCc -3' miRNA: 3'- cGUUCGGGCCGCCgAUGAaGUaCCAG- -5' |
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8962 | 5' | -55.7 | NC_002512.2 | + | 151027 | 0.69 | 0.84735 |
Target: 5'- cGCGAGCCaccucgaGGCGGCgGCccgUCAcgcGGUCc -3' miRNA: 3'- -CGUUCGGg------CCGCCGaUGa--AGUa--CCAG- -5' |
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8962 | 5' | -55.7 | NC_002512.2 | + | 111103 | 0.69 | 0.855099 |
Target: 5'- aGCucccGCCCGGCGGCggagGCgccgcccgCggGGUCc -3' miRNA: 3'- -CGuu--CGGGCCGCCGa---UGaa------GuaCCAG- -5' |
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8962 | 5' | -55.7 | NC_002512.2 | + | 169549 | 0.69 | 0.862653 |
Target: 5'- gGCu-GCCCGGCGGCguggcCUUCGccgGcGUCu -3' miRNA: 3'- -CGuuCGGGCCGCCGau---GAAGUa--C-CAG- -5' |
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8962 | 5' | -55.7 | NC_002512.2 | + | 91720 | 0.69 | 0.862653 |
Target: 5'- cGC-AGCCCGGCGGgUGCggaCAguucGUCa -3' miRNA: 3'- -CGuUCGGGCCGCCgAUGaa-GUac--CAG- -5' |
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8962 | 5' | -55.7 | NC_002512.2 | + | 59833 | 0.69 | 0.862653 |
Target: 5'- gGC-GGCCgCGGCGGCgGCggcCAUGGcCa -3' miRNA: 3'- -CGuUCGG-GCCGCCGaUGaa-GUACCaG- -5' |
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8962 | 5' | -55.7 | NC_002512.2 | + | 103340 | 0.69 | 0.862653 |
Target: 5'- gGCGuAGCCCGG-GGCggACggCAcGGUCg -3' miRNA: 3'- -CGU-UCGGGCCgCCGa-UGaaGUaCCAG- -5' |
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8962 | 5' | -55.7 | NC_002512.2 | + | 188800 | 0.69 | 0.869281 |
Target: 5'- gGC-GGCCCcgaucgcGGCGGCUACUUCAa---- -3' miRNA: 3'- -CGuUCGGG-------CCGCCGAUGAAGUaccag -5' |
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8962 | 5' | -55.7 | NC_002512.2 | + | 153271 | 0.69 | 0.870007 |
Target: 5'- gGCGGGuCCUGGuCGGCUgGCUccgcugggucggUCcgGGUCg -3' miRNA: 3'- -CGUUC-GGGCC-GCCGA-UGA------------AGuaCCAG- -5' |
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8962 | 5' | -55.7 | NC_002512.2 | + | 118902 | 0.68 | 0.877154 |
Target: 5'- aGCGGGCggccucgguccaCCGGCGGCUGCUcgUCAUcGa- -3' miRNA: 3'- -CGUUCG------------GGCCGCCGAUGA--AGUAcCag -5' |
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8962 | 5' | -55.7 | NC_002512.2 | + | 43382 | 0.68 | 0.877154 |
Target: 5'- cGCuGGCCCGGaCGGCcGCguaGUGGa- -3' miRNA: 3'- -CGuUCGGGCC-GCCGaUGaagUACCag -5' |
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8962 | 5' | -55.7 | NC_002512.2 | + | 121342 | 0.68 | 0.88409 |
Target: 5'- -aAGGCCCGGCGGac-CUUCuccgccgucgGGUCc -3' miRNA: 3'- cgUUCGGGCCGCCgauGAAGua--------CCAG- -5' |
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8962 | 5' | -55.7 | NC_002512.2 | + | 180566 | 0.68 | 0.88409 |
Target: 5'- gGCGGGCuCCGGUGGCU-CUcuaUCAgGGcCg -3' miRNA: 3'- -CGUUCG-GGCCGCCGAuGA---AGUaCCaG- -5' |
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8962 | 5' | -55.7 | NC_002512.2 | + | 167567 | 0.68 | 0.890811 |
Target: 5'- ---uGCCCGuCGGCUuCUUCccGGUCa -3' miRNA: 3'- cguuCGGGCcGCCGAuGAAGuaCCAG- -5' |
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8962 | 5' | -55.7 | NC_002512.2 | + | 83975 | 0.68 | 0.890811 |
Target: 5'- gGCGGauGCCCGGCGcggggcggucgcGCaGCUUCA-GGUCc -3' miRNA: 3'- -CGUU--CGGGCCGC------------CGaUGAAGUaCCAG- -5' |
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8962 | 5' | -55.7 | NC_002512.2 | + | 106319 | 0.68 | 0.897312 |
Target: 5'- cGCAGcGCCuuCGGCGGCU-CUcCccGGUCg -3' miRNA: 3'- -CGUU-CGG--GCCGCCGAuGAaGuaCCAG- -5' |
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8962 | 5' | -55.7 | NC_002512.2 | + | 165390 | 0.68 | 0.903591 |
Target: 5'- cGCAAGgUCGG-GGC-GC-UCAUGGUCc -3' miRNA: 3'- -CGUUCgGGCCgCCGaUGaAGUACCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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