miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8962 5' -55.7 NC_002512.2 + 103340 0.69 0.862653
Target:  5'- gGCGuAGCCCGG-GGCggACggCAcGGUCg -3'
miRNA:   3'- -CGU-UCGGGCCgCCGa-UGaaGUaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 103355 0.67 0.936464
Target:  5'- aCGAGUCCGG-GGCcGCggUcgGGUCg -3'
miRNA:   3'- cGUUCGGGCCgCCGaUGaaGuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 104343 0.66 0.9498
Target:  5'- cGUcGGUCgGGCGGCggcucGCUUgGUGGaUCg -3'
miRNA:   3'- -CGuUCGGgCCGCCGa----UGAAgUACC-AG- -5'
8962 5' -55.7 NC_002512.2 + 106319 0.68 0.897312
Target:  5'- cGCAGcGCCuuCGGCGGCU-CUcCccGGUCg -3'
miRNA:   3'- -CGUU-CGG--GCCGCCGAuGAaGuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 107623 0.8 0.291816
Target:  5'- aGCGAGUCgGGCGGCUGCc-CGUGGUUc -3'
miRNA:   3'- -CGUUCGGgCCGCCGAUGaaGUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 111103 0.69 0.855099
Target:  5'- aGCucccGCCCGGCGGCggagGCgccgcccgCggGGUCc -3'
miRNA:   3'- -CGuu--CGGGCCGCCGa---UGaa------GuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 112930 0.67 0.931561
Target:  5'- gGC-GGCCCGGUGGCgcgcgagcccGCggaCcgGGUCg -3'
miRNA:   3'- -CGuUCGGGCCGCCGa---------UGaa-GuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 114196 0.66 0.95646
Target:  5'- uCGGGCCCGGCGGCcaugaggagGCggaagauggcggugaUGUGGUCc -3'
miRNA:   3'- cGUUCGGGCCGCCGa--------UGaa-------------GUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 118792 0.71 0.751275
Target:  5'- ---cGCCgGGCGGgaGCUgugggcccccgUCGUGGUCg -3'
miRNA:   3'- cguuCGGgCCGCCgaUGA-----------AGUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 118902 0.68 0.877154
Target:  5'- aGCGGGCggccucgguccaCCGGCGGCUGCUcgUCAUcGa- -3'
miRNA:   3'- -CGUUCG------------GGCCGCCGAUGA--AGUAcCag -5'
8962 5' -55.7 NC_002512.2 + 120056 0.67 0.915468
Target:  5'- cCGAcGCCCGGCGGUUcgACgugaacgCggGGUCg -3'
miRNA:   3'- cGUU-CGGGCCGCCGA--UGaa-----GuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 121342 0.68 0.88409
Target:  5'- -aAGGCCCGGCGGac-CUUCuccgccgucgGGUCc -3'
miRNA:   3'- cgUUCGGGCCGCCgauGAAGua--------CCAG- -5'
8962 5' -55.7 NC_002512.2 + 123056 0.7 0.822997
Target:  5'- uGCAcccuGGCCCGGCuGCUgugggaggGCUUCA-GGUUc -3'
miRNA:   3'- -CGU----UCGGGCCGcCGA--------UGAAGUaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 126359 0.7 0.78822
Target:  5'- ---cGgCCGGCGGCaACUUCcugcUGGUCa -3'
miRNA:   3'- cguuCgGGCCGCCGaUGAAGu---ACCAG- -5'
8962 5' -55.7 NC_002512.2 + 126601 0.66 0.941137
Target:  5'- aCAGGuCCCGGCGGau-CUcgUCGagGGUCa -3'
miRNA:   3'- cGUUC-GGGCCGCCgauGA--AGUa-CCAG- -5'
8962 5' -55.7 NC_002512.2 + 128010 0.73 0.653044
Target:  5'- cGCuuucGCCC-GCGGCUGCUgcggCcgGGUCg -3'
miRNA:   3'- -CGuu--CGGGcCGCCGAUGAa---GuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 128407 0.7 0.822997
Target:  5'- uCGAGCCCGGUGGCgg------GGUCg -3'
miRNA:   3'- cGUUCGGGCCGCCGaugaaguaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 129654 0.77 0.41398
Target:  5'- aGCGGGCCCGucaggagaucaGCGGCU-CUUaCGUGGUCc -3'
miRNA:   3'- -CGUUCGGGC-----------CGCCGAuGAA-GUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 133105 0.67 0.936464
Target:  5'- aGCGAcucCCCGuCGGCUACgccCAUGGUg -3'
miRNA:   3'- -CGUUc--GGGCcGCCGAUGaa-GUACCAg -5'
8962 5' -55.7 NC_002512.2 + 145388 0.67 0.915468
Target:  5'- -gGAGCCCGacGCGGCgucCggggUCcgGGUCu -3'
miRNA:   3'- cgUUCGGGC--CGCCGau-Ga---AGuaCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.