miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8962 5' -55.7 NC_002512.2 + 128010 0.73 0.653044
Target:  5'- cGCuuucGCCC-GCGGCUGCUgcggCcgGGUCg -3'
miRNA:   3'- -CGuu--CGGGcCGCCGAUGAa---GuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 83103 0.72 0.71271
Target:  5'- cCGGGUCCGGCGGUccgGCgUCGgucgGGUCg -3'
miRNA:   3'- cGUUCGGGCCGCCGa--UGaAGUa---CCAG- -5'
8962 5' -55.7 NC_002512.2 + 7321 0.71 0.73216
Target:  5'- gGCGGGCCgCGGCGGg-ACggUcgGGUCg -3'
miRNA:   3'- -CGUUCGG-GCCGCCgaUGaaGuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 81248 0.71 0.73216
Target:  5'- -gGAGUCCGGCGGCcUGCggUUGaGGUCg -3'
miRNA:   3'- cgUUCGGGCCGCCG-AUGa-AGUaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 59833 0.69 0.862653
Target:  5'- gGC-GGCCgCGGCGGCgGCggcCAUGGcCa -3'
miRNA:   3'- -CGuUCGG-GCCGCCGaUGaa-GUACCaG- -5'
8962 5' -55.7 NC_002512.2 + 91720 0.69 0.862653
Target:  5'- cGC-AGCCCGGCGGgUGCggaCAguucGUCa -3'
miRNA:   3'- -CGuUCGGGCCGCCgAUGaa-GUac--CAG- -5'
8962 5' -55.7 NC_002512.2 + 123056 0.7 0.822997
Target:  5'- uGCAcccuGGCCCGGCuGCUgugggaggGCUUCA-GGUUc -3'
miRNA:   3'- -CGU----UCGGGCCGcCGA--------UGAAGUaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 42609 0.7 0.797138
Target:  5'- -gAAGCCCGGgGGC-ACUUCGaGG-Cg -3'
miRNA:   3'- cgUUCGGGCCgCCGaUGAAGUaCCaG- -5'
8962 5' -55.7 NC_002512.2 + 126359 0.7 0.78822
Target:  5'- ---cGgCCGGCGGCaACUUCcugcUGGUCa -3'
miRNA:   3'- cguuCgGGCCGCCGaUGAAGu---ACCAG- -5'
8962 5' -55.7 NC_002512.2 + 118792 0.71 0.751275
Target:  5'- ---cGCCgGGCGGgaGCUgugggcccccgUCGUGGUCg -3'
miRNA:   3'- cguuCGGgCCGCCgaUGA-----------AGUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 133105 0.67 0.936464
Target:  5'- aGCGAcucCCCGuCGGCUACgccCAUGGUg -3'
miRNA:   3'- -CGUUc--GGGCcGCCGAUGaa-GUACCAg -5'
8962 5' -55.7 NC_002512.2 + 126601 0.66 0.941137
Target:  5'- aCAGGuCCCGGCGGau-CUcgUCGagGGUCa -3'
miRNA:   3'- cGUUC-GGGCCGCCgauGA--AGUa-CCAG- -5'
8962 5' -55.7 NC_002512.2 + 55797 0.66 0.945581
Target:  5'- -aGAGUCUGcGCGGCUACcgacgUCAUcGGUa -3'
miRNA:   3'- cgUUCGGGC-CGCCGAUGa----AGUA-CCAg -5'
8962 5' -55.7 NC_002512.2 + 204886 0.66 0.945581
Target:  5'- gGCGAGCUcuCGGaCGGCgaGCggUCcUGGUCg -3'
miRNA:   3'- -CGUUCGG--GCC-GCCGa-UGa-AGuACCAG- -5'
8962 5' -55.7 NC_002512.2 + 212154 0.66 0.945581
Target:  5'- gGCGGGCaCUGGCGGCgggACggC-UGGg- -3'
miRNA:   3'- -CGUUCG-GGCCGCCGa--UGaaGuACCag -5'
8962 5' -55.7 NC_002512.2 + 114196 0.66 0.95646
Target:  5'- uCGGGCCCGGCGGCcaugaggagGCggaagauggcggugaUGUGGUCc -3'
miRNA:   3'- cGUUCGGGCCGCCGa--------UGaa-------------GUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 196398 0.66 0.95646
Target:  5'- cGCGGGUCUGGCgcggggacgcggggGGCgGCggCcgGGUCg -3'
miRNA:   3'- -CGUUCGGGCCG--------------CCGaUGaaGuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 218229 0.66 0.957569
Target:  5'- gGCGGGCCgCGGCGccgaUAUaugUCcgGGUCg -3'
miRNA:   3'- -CGUUCGG-GCCGCcg--AUGa--AGuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 155631 0.66 0.961127
Target:  5'- uGCGAGgagagCCGGCGGC-GCUUCGgcGUCc -3'
miRNA:   3'- -CGUUCg----GGCCGCCGaUGAAGUacCAG- -5'
8962 5' -55.7 NC_002512.2 + 209783 1.12 0.002802
Target:  5'- gGCAAGCCCGGCGGCUACUUCAUGGUCg -3'
miRNA:   3'- -CGUUCGGGCCGCCGAUGAAGUACCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.