miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8962 5' -55.7 NC_002512.2 + 81643 0.67 0.921063
Target:  5'- cCAGGCUCGGCGcGUUGCUg-AUGG-Cg -3'
miRNA:   3'- cGUUCGGGCCGC-CGAUGAagUACCaG- -5'
8962 5' -55.7 NC_002512.2 + 91720 0.69 0.862653
Target:  5'- cGC-AGCCCGGCGGgUGCggaCAguucGUCa -3'
miRNA:   3'- -CGuUCGGGCCGCCgAUGaa-GUac--CAG- -5'
8962 5' -55.7 NC_002512.2 + 59833 0.69 0.862653
Target:  5'- gGC-GGCCgCGGCGGCgGCggcCAUGGcCa -3'
miRNA:   3'- -CGuUCGG-GCCGCCGaUGaa-GUACCaG- -5'
8962 5' -55.7 NC_002512.2 + 43382 0.68 0.877154
Target:  5'- cGCuGGCCCGGaCGGCcGCguaGUGGa- -3'
miRNA:   3'- -CGuUCGGGCC-GCCGaUGaagUACCag -5'
8962 5' -55.7 NC_002512.2 + 118902 0.68 0.877154
Target:  5'- aGCGGGCggccucgguccaCCGGCGGCUGCUcgUCAUcGa- -3'
miRNA:   3'- -CGUUCG------------GGCCGCCGAUGA--AGUAcCag -5'
8962 5' -55.7 NC_002512.2 + 121342 0.68 0.88409
Target:  5'- -aAGGCCCGGCGGac-CUUCuccgccgucgGGUCc -3'
miRNA:   3'- cgUUCGGGCCGCCgauGAAGua--------CCAG- -5'
8962 5' -55.7 NC_002512.2 + 83975 0.68 0.890811
Target:  5'- gGCGGauGCCCGGCGcggggcggucgcGCaGCUUCA-GGUCc -3'
miRNA:   3'- -CGUU--CGGGCCGC------------CGaUGAAGUaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 106319 0.68 0.897312
Target:  5'- cGCAGcGCCuuCGGCGGCU-CUcCccGGUCg -3'
miRNA:   3'- -CGUU-CGG--GCCGCCGAuGAaGuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 120056 0.67 0.915468
Target:  5'- cCGAcGCCCGGCGGUUcgACgugaacgCggGGUCg -3'
miRNA:   3'- cGUU-CGGGCCGCCGA--UGaa-----GuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 123056 0.7 0.822997
Target:  5'- uGCAcccuGGCCCGGCuGCUgugggaggGCUUCA-GGUUc -3'
miRNA:   3'- -CGU----UCGGGCCGcCGA--------UGAAGUaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 42609 0.7 0.797138
Target:  5'- -gAAGCCCGGgGGC-ACUUCGaGG-Cg -3'
miRNA:   3'- cgUUCGGGCCgCCGaUGAAGUaCCaG- -5'
8962 5' -55.7 NC_002512.2 + 126359 0.7 0.78822
Target:  5'- ---cGgCCGGCGGCaACUUCcugcUGGUCa -3'
miRNA:   3'- cguuCgGGCCGCCGaUGAAGu---ACCAG- -5'
8962 5' -55.7 NC_002512.2 + 34848 0.79 0.349109
Target:  5'- cGCGGGCCgCGGCGGCUuCUUCGUcgccGUCg -3'
miRNA:   3'- -CGUUCGG-GCCGCCGAuGAAGUAc---CAG- -5'
8962 5' -55.7 NC_002512.2 + 129654 0.77 0.41398
Target:  5'- aGCGGGCCCGucaggagaucaGCGGCU-CUUaCGUGGUCc -3'
miRNA:   3'- -CGUUCGGGC-----------CGCCGAuGAA-GUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 101966 0.73 0.642996
Target:  5'- cGCGGGCCCGcCGGCggGCU-CGUGGcCg -3'
miRNA:   3'- -CGUUCGGGCcGCCGa-UGAaGUACCaG- -5'
8962 5' -55.7 NC_002512.2 + 128010 0.73 0.653044
Target:  5'- cGCuuucGCCC-GCGGCUGCUgcggCcgGGUCg -3'
miRNA:   3'- -CGuu--CGGGcCGCCGAUGAa---GuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 83103 0.72 0.71271
Target:  5'- cCGGGUCCGGCGGUccgGCgUCGgucgGGUCg -3'
miRNA:   3'- cGUUCGGGCCGCCGa--UGaAGUa---CCAG- -5'
8962 5' -55.7 NC_002512.2 + 7321 0.71 0.73216
Target:  5'- gGCGGGCCgCGGCGGg-ACggUcgGGUCg -3'
miRNA:   3'- -CGUUCGG-GCCGCCgaUGaaGuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 81248 0.71 0.73216
Target:  5'- -gGAGUCCGGCGGCcUGCggUUGaGGUCg -3'
miRNA:   3'- cgUUCGGGCCGCCG-AUGa-AGUaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 118792 0.71 0.751275
Target:  5'- ---cGCCgGGCGGgaGCUgugggcccccgUCGUGGUCg -3'
miRNA:   3'- cguuCGGgCCGCCgaUGA-----------AGUACCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.