miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8962 5' -55.7 NC_002512.2 + 188926 0.66 0.961127
Target:  5'- -aGAGuCCCGGUGGCgggGCgcggcGGUCg -3'
miRNA:   3'- cgUUC-GGGCCGCCGa--UGaaguaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 165390 0.68 0.903591
Target:  5'- cGCAAGgUCGG-GGC-GC-UCAUGGUCc -3'
miRNA:   3'- -CGUUCgGGCCgCCGaUGaAGUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 175806 0.68 0.903591
Target:  5'- gGCGGcGuCCCGGCGGCUccGCUcgucCGUGG-Cg -3'
miRNA:   3'- -CGUU-C-GGGCCGCCGA--UGAa---GUACCaG- -5'
8962 5' -55.7 NC_002512.2 + 209783 1.12 0.002802
Target:  5'- gGCAAGCCCGGCGGCUACUUCAUGGUCg -3'
miRNA:   3'- -CGUUCGGGCCGCCGAUGAAGUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 114196 0.66 0.95646
Target:  5'- uCGGGCCCGGCGGCcaugaggagGCggaagauggcggugaUGUGGUCc -3'
miRNA:   3'- cGUUCGGGCCGCCGa--------UGaa-------------GUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 212154 0.66 0.945581
Target:  5'- gGCGGGCaCUGGCGGCgggACggC-UGGg- -3'
miRNA:   3'- -CGUUCG-GGCCGCCGa--UGaaGuACCag -5'
8962 5' -55.7 NC_002512.2 + 55797 0.66 0.945581
Target:  5'- -aGAGUCUGcGCGGCUACcgacgUCAUcGGUa -3'
miRNA:   3'- cgUUCGGGC-CGCCGAUGa----AGUA-CCAg -5'
8962 5' -55.7 NC_002512.2 + 126601 0.66 0.941137
Target:  5'- aCAGGuCCCGGCGGau-CUcgUCGagGGUCa -3'
miRNA:   3'- cGUUC-GGGCCGCCgauGA--AGUa-CCAG- -5'
8962 5' -55.7 NC_002512.2 + 194327 0.67 0.931561
Target:  5'- --uGGCCCGGgaCGGUUGC---GUGGUCg -3'
miRNA:   3'- cguUCGGGCC--GCCGAUGaagUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 188641 0.68 0.909643
Target:  5'- cGCAagGGCgCCGGCGGCggcgGCggcccgUCGUccgaccgcggcGGUCu -3'
miRNA:   3'- -CGU--UCG-GGCCGCCGa---UGa-----AGUA-----------CCAG- -5'
8962 5' -55.7 NC_002512.2 + 182223 0.67 0.926427
Target:  5'- aGCAcGUUCGGCGGCgccacgUGCUUCAgcagGGa- -3'
miRNA:   3'- -CGUuCGGGCCGCCG------AUGAAGUa---CCag -5'
8962 5' -55.7 NC_002512.2 + 112930 0.67 0.931561
Target:  5'- gGC-GGCCCGGUGGCgcgcgagcccGCggaCcgGGUCg -3'
miRNA:   3'- -CGuUCGGGCCGCCGa---------UGaa-GuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 155631 0.66 0.961127
Target:  5'- uGCGAGgagagCCGGCGGC-GCUUCGgcGUCc -3'
miRNA:   3'- -CGUUCg----GGCCGCCGaUGAAGUacCAG- -5'
8962 5' -55.7 NC_002512.2 + 51061 0.67 0.926427
Target:  5'- uCGGGCCCGGaaGGCUAUcUCuGUGGcUCg -3'
miRNA:   3'- cGUUCGGGCCg-CCGAUGaAG-UACC-AG- -5'
8962 5' -55.7 NC_002512.2 + 218229 0.66 0.957569
Target:  5'- gGCGGGCCgCGGCGccgaUAUaugUCcgGGUCg -3'
miRNA:   3'- -CGUUCGG-GCCGCcg--AUGa--AGuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 133105 0.67 0.936464
Target:  5'- aGCGAcucCCCGuCGGCUACgccCAUGGUg -3'
miRNA:   3'- -CGUUc--GGGCcGCCGAUGaa-GUACCAg -5'
8962 5' -55.7 NC_002512.2 + 145388 0.67 0.915468
Target:  5'- -gGAGCCCGacGCGGCgucCggggUCcgGGUCu -3'
miRNA:   3'- cgUUCGGGC--CGCCGau-Ga---AGuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 177328 0.68 0.903591
Target:  5'- uGUcGGCCCGGUauaGUUugUUCAgGGUCa -3'
miRNA:   3'- -CGuUCGGGCCGc--CGAugAAGUaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 196398 0.66 0.95646
Target:  5'- cGCGGGUCUGGCgcggggacgcggggGGCgGCggCcgGGUCg -3'
miRNA:   3'- -CGUUCGGGCCG--------------CCGaUGaaGuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 204886 0.66 0.945581
Target:  5'- gGCGAGCUcuCGGaCGGCgaGCggUCcUGGUCg -3'
miRNA:   3'- -CGUUCGG--GCC-GCCGa-UGa-AGuACCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.