miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8962 5' -55.7 NC_002512.2 + 194327 0.67 0.931561
Target:  5'- --uGGCCCGGgaCGGUUGC---GUGGUCg -3'
miRNA:   3'- cguUCGGGCC--GCCGAUGaagUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 51061 0.67 0.926427
Target:  5'- uCGGGCCCGGaaGGCUAUcUCuGUGGcUCg -3'
miRNA:   3'- cGUUCGGGCCg-CCGAUGaAG-UACC-AG- -5'
8962 5' -55.7 NC_002512.2 + 182223 0.67 0.926427
Target:  5'- aGCAcGUUCGGCGGCgccacgUGCUUCAgcagGGa- -3'
miRNA:   3'- -CGUuCGGGCCGCCG------AUGAAGUa---CCag -5'
8962 5' -55.7 NC_002512.2 + 222876 0.67 0.926427
Target:  5'- gGCAAgGCCCuGCGGCUcuccugcgACUUCGaGGg- -3'
miRNA:   3'- -CGUU-CGGGcCGCCGA--------UGAAGUaCCag -5'
8962 5' -55.7 NC_002512.2 + 81643 0.67 0.921063
Target:  5'- cCAGGCUCGGCGcGUUGCUg-AUGG-Cg -3'
miRNA:   3'- cGUUCGGGCCGC-CGAUGAagUACCaG- -5'
8962 5' -55.7 NC_002512.2 + 145388 0.67 0.915468
Target:  5'- -gGAGCCCGacGCGGCgucCggggUCcgGGUCu -3'
miRNA:   3'- cgUUCGGGC--CGCCGau-Ga---AGuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 120056 0.67 0.915468
Target:  5'- cCGAcGCCCGGCGGUUcgACgugaacgCggGGUCg -3'
miRNA:   3'- cGUU-CGGGCCGCCGA--UGaa-----GuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 188641 0.68 0.909643
Target:  5'- cGCAagGGCgCCGGCGGCggcgGCggcccgUCGUccgaccgcggcGGUCu -3'
miRNA:   3'- -CGU--UCG-GGCCGCCGa---UGa-----AGUA-----------CCAG- -5'
8962 5' -55.7 NC_002512.2 + 177328 0.68 0.903591
Target:  5'- uGUcGGCCCGGUauaGUUugUUCAgGGUCa -3'
miRNA:   3'- -CGuUCGGGCCGc--CGAugAAGUaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 165390 0.68 0.903591
Target:  5'- cGCAAGgUCGG-GGC-GC-UCAUGGUCc -3'
miRNA:   3'- -CGUUCgGGCCgCCGaUGaAGUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 175806 0.68 0.903591
Target:  5'- gGCGGcGuCCCGGCGGCUccGCUcgucCGUGG-Cg -3'
miRNA:   3'- -CGUU-C-GGGCCGCCGA--UGAa---GUACCaG- -5'
8962 5' -55.7 NC_002512.2 + 106319 0.68 0.897312
Target:  5'- cGCAGcGCCuuCGGCGGCU-CUcCccGGUCg -3'
miRNA:   3'- -CGUU-CGG--GCCGCCGAuGAaGuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 83975 0.68 0.890811
Target:  5'- gGCGGauGCCCGGCGcggggcggucgcGCaGCUUCA-GGUCc -3'
miRNA:   3'- -CGUU--CGGGCCGC------------CGaUGAAGUaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 167567 0.68 0.890811
Target:  5'- ---uGCCCGuCGGCUuCUUCccGGUCa -3'
miRNA:   3'- cguuCGGGCcGCCGAuGAAGuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 180566 0.68 0.88409
Target:  5'- gGCGGGCuCCGGUGGCU-CUcuaUCAgGGcCg -3'
miRNA:   3'- -CGUUCG-GGCCGCCGAuGA---AGUaCCaG- -5'
8962 5' -55.7 NC_002512.2 + 121342 0.68 0.88409
Target:  5'- -aAGGCCCGGCGGac-CUUCuccgccgucgGGUCc -3'
miRNA:   3'- cgUUCGGGCCGCCgauGAAGua--------CCAG- -5'
8962 5' -55.7 NC_002512.2 + 118902 0.68 0.877154
Target:  5'- aGCGGGCggccucgguccaCCGGCGGCUGCUcgUCAUcGa- -3'
miRNA:   3'- -CGUUCG------------GGCCGCCGAUGA--AGUAcCag -5'
8962 5' -55.7 NC_002512.2 + 43382 0.68 0.877154
Target:  5'- cGCuGGCCCGGaCGGCcGCguaGUGGa- -3'
miRNA:   3'- -CGuUCGGGCC-GCCGaUGaagUACCag -5'
8962 5' -55.7 NC_002512.2 + 153271 0.69 0.870007
Target:  5'- gGCGGGuCCUGGuCGGCUgGCUccgcugggucggUCcgGGUCg -3'
miRNA:   3'- -CGUUC-GGGCC-GCCGA-UGA------------AGuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 188800 0.69 0.869281
Target:  5'- gGC-GGCCCcgaucgcGGCGGCUACUUCAa---- -3'
miRNA:   3'- -CGuUCGGG-------CCGCCGAUGAAGUaccag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.