miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8962 5' -55.7 NC_002512.2 + 222876 0.67 0.926427
Target:  5'- gGCAAgGCCCuGCGGCUcuccugcgACUUCGaGGg- -3'
miRNA:   3'- -CGUU-CGGGcCGCCGA--------UGAAGUaCCag -5'
8962 5' -55.7 NC_002512.2 + 221071 0.73 0.622882
Target:  5'- cCAAGCuCCGGCGGCggaACggCGUGGg- -3'
miRNA:   3'- cGUUCG-GGCCGCCGa--UGaaGUACCag -5'
8962 5' -55.7 NC_002512.2 + 218229 0.66 0.957569
Target:  5'- gGCGGGCCgCGGCGccgaUAUaugUCcgGGUCg -3'
miRNA:   3'- -CGUUCGG-GCCGCcg--AUGa--AGuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 217581 0.75 0.562927
Target:  5'- aGCcGGUCCGGCGGCgccGCcUCGggGGUCg -3'
miRNA:   3'- -CGuUCGGGCCGCCGa--UGaAGUa-CCAG- -5'
8962 5' -55.7 NC_002512.2 + 212154 0.66 0.945581
Target:  5'- gGCGGGCaCUGGCGGCgggACggC-UGGg- -3'
miRNA:   3'- -CGUUCG-GGCCGCCGa--UGaaGuACCag -5'
8962 5' -55.7 NC_002512.2 + 209868 0.7 0.822997
Target:  5'- uGCGGGa-CGcCGGCUACUaCGUGGUCg -3'
miRNA:   3'- -CGUUCggGCcGCCGAUGAaGUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 209783 1.12 0.002802
Target:  5'- gGCAAGCCCGGCGGCUACUUCAUGGUCg -3'
miRNA:   3'- -CGUUCGGGCCGCCGAUGAAGUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 208250 0.7 0.822997
Target:  5'- -aAGGCCCGGUccugggaacGCUACaccacgUUCAUGGUCa -3'
miRNA:   3'- cgUUCGGGCCGc--------CGAUG------AAGUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 207931 0.69 0.84735
Target:  5'- aCGGGCCCGGUGG-UGCU-CG-GGUCc -3'
miRNA:   3'- cGUUCGGGCCGCCgAUGAaGUaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 204886 0.66 0.945581
Target:  5'- gGCGAGCUcuCGGaCGGCgaGCggUCcUGGUCg -3'
miRNA:   3'- -CGUUCGG--GCC-GCCGa-UGa-AGuACCAG- -5'
8962 5' -55.7 NC_002512.2 + 200720 0.72 0.722472
Target:  5'- gGCugccGCCCGGCGGUccgaacgggucgUACcgggCGUGGUCg -3'
miRNA:   3'- -CGuu--CGGGCCGCCG------------AUGaa--GUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 196398 0.66 0.95646
Target:  5'- cGCGGGUCUGGCgcggggacgcggggGGCgGCggCcgGGUCg -3'
miRNA:   3'- -CGUUCGGGCCG--------------CCGaUGaaGuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 196178 0.71 0.751275
Target:  5'- gGCGAGCCCgaGGgGGCgACggCcgGGUCc -3'
miRNA:   3'- -CGUUCGGG--CCgCCGaUGaaGuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 194327 0.67 0.931561
Target:  5'- --uGGCCCGGgaCGGUUGC---GUGGUCg -3'
miRNA:   3'- cguUCGGGCC--GCCGAUGaagUACCAG- -5'
8962 5' -55.7 NC_002512.2 + 188926 0.66 0.961127
Target:  5'- -aGAGuCCCGGUGGCgggGCgcggcGGUCg -3'
miRNA:   3'- cgUUC-GGGCCGCCGa--UGaaguaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 188800 0.69 0.869281
Target:  5'- gGC-GGCCCcgaucgcGGCGGCUACUUCAa---- -3'
miRNA:   3'- -CGuUCGGG-------CCGCCGAUGAAGUaccag -5'
8962 5' -55.7 NC_002512.2 + 188641 0.68 0.909643
Target:  5'- cGCAagGGCgCCGGCGGCggcgGCggcccgUCGUccgaccgcggcGGUCu -3'
miRNA:   3'- -CGU--UCG-GGCCGCCGa---UGa-----AGUA-----------CCAG- -5'
8962 5' -55.7 NC_002512.2 + 188561 0.74 0.57284
Target:  5'- gGC-AGCuCCGGCGGCgacgACUUCucGGUCu -3'
miRNA:   3'- -CGuUCG-GGCCGCCGa---UGAAGuaCCAG- -5'
8962 5' -55.7 NC_002512.2 + 182223 0.67 0.926427
Target:  5'- aGCAcGUUCGGCGGCgccacgUGCUUCAgcagGGa- -3'
miRNA:   3'- -CGUuCGGGCCGCCG------AUGAAGUa---CCag -5'
8962 5' -55.7 NC_002512.2 + 180566 0.68 0.88409
Target:  5'- gGCGGGCuCCGGUGGCU-CUcuaUCAgGGcCg -3'
miRNA:   3'- -CGUUCG-GGCCGCCGAuGA---AGUaCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.