miRNA display CGI


Results 41 - 60 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8963 3' -59.9 NC_002512.2 + 6078 0.75 0.369152
Target:  5'- -gUCgUCGUcCCGGC--GGUCGCCGCCg -3'
miRNA:   3'- cgAGgAGCA-GGCCGugCCAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 98145 0.75 0.392278
Target:  5'- gGCUCUUCGgacaCCGGUucgGCGGUC-CCGCg -3'
miRNA:   3'- -CGAGGAGCa---GGCCG---UGCCAGuGGCGg -5'
8963 3' -59.9 NC_002512.2 + 106758 0.75 0.392278
Target:  5'- cGCUCCgCGUCCGGCucuCGG-C-CCGCg -3'
miRNA:   3'- -CGAGGaGCAGGCCGu--GCCaGuGGCGg -5'
8963 3' -59.9 NC_002512.2 + 86623 0.75 0.403388
Target:  5'- gGUUCCUCGUCCucgucGGCgcggugugguggaucGCGGUgGCCGCg -3'
miRNA:   3'- -CGAGGAGCAGG-----CCG---------------UGCCAgUGGCGg -5'
8963 3' -59.9 NC_002512.2 + 65411 0.74 0.43285
Target:  5'- -gUCCUCGUagcUCGGCggGCGGUCGUCGCCc -3'
miRNA:   3'- cgAGGAGCA---GGCCG--UGCCAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 80620 0.74 0.43285
Target:  5'- cGCUCCUCGucguacccgUCCGGCcguccgcgGCGG-CGgCGCCg -3'
miRNA:   3'- -CGAGGAGC---------AGGCCG--------UGCCaGUgGCGG- -5'
8963 3' -59.9 NC_002512.2 + 10397 0.74 0.440409
Target:  5'- aGCaUCCUCGUCUgacccgccccaggGGCACGaccgcgucGUCGCCGUCg -3'
miRNA:   3'- -CG-AGGAGCAGG-------------CCGUGC--------CAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 1641 0.74 0.441254
Target:  5'- cGCcCCcgCGUCCGGCACGuUCGCCcuucccGCCg -3'
miRNA:   3'- -CGaGGa-GCAGGCCGUGCcAGUGG------CGG- -5'
8963 3' -59.9 NC_002512.2 + 133150 0.74 0.441254
Target:  5'- cGCUCgCUCGUCCGGUucccGCGGgccggC-CCGCg -3'
miRNA:   3'- -CGAG-GAGCAGGCCG----UGCCa----GuGGCGg -5'
8963 3' -59.9 NC_002512.2 + 154439 0.74 0.447191
Target:  5'- -aUCCUUGUCCGGCGCcGUCGacggugcguuccccUCGCCu -3'
miRNA:   3'- cgAGGAGCAGGCCGUGcCAGU--------------GGCGG- -5'
8963 3' -59.9 NC_002512.2 + 47627 0.74 0.458334
Target:  5'- aGUUCCcCGUCCuGGCGCcGUCGCUGUCc -3'
miRNA:   3'- -CGAGGaGCAGG-CCGUGcCAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 108520 0.74 0.461793
Target:  5'- cCUCCUC-UCCGGCccucuccgccguccaACGGcccCGCCGCCg -3'
miRNA:   3'- cGAGGAGcAGGCCG---------------UGCCa--GUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 75556 0.73 0.475762
Target:  5'- cGCgggCUCG-CCGGgGCGGggcCGCCGCCg -3'
miRNA:   3'- -CGag-GAGCaGGCCgUGCCa--GUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 49837 0.73 0.484598
Target:  5'- ----gUCGUCCGGCACccgCACCGCCu -3'
miRNA:   3'- cgaggAGCAGGCCGUGccaGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 14809 0.73 0.484598
Target:  5'- -gUCCUCGgucccgCCGaCGCGGUagaCGCCGCCg -3'
miRNA:   3'- cgAGGAGCa-----GGCcGUGCCA---GUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 112874 0.73 0.492618
Target:  5'- cGCgUCCUCcgGcCCGGCGuucucguCGGUCGCCGCg -3'
miRNA:   3'- -CG-AGGAG--CaGGCCGU-------GCCAGUGGCGg -5'
8963 3' -59.9 NC_002512.2 + 103095 0.73 0.511561
Target:  5'- -aUCC-CGgggacgggCgCGGCACGcGUCGCCGCCg -3'
miRNA:   3'- cgAGGaGCa-------G-GCCGUGC-CAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 16984 0.72 0.529877
Target:  5'- cGUUCCUC--CCGGCGCcgacucGGUCcaugGCCGCCg -3'
miRNA:   3'- -CGAGGAGcaGGCCGUG------CCAG----UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 83097 0.72 0.529877
Target:  5'- cCUCCUCcggguccggcgGUCCGGCGuCGGUCGggUCGUCg -3'
miRNA:   3'- cGAGGAG-----------CAGGCCGU-GCCAGU--GGCGG- -5'
8963 3' -59.9 NC_002512.2 + 140791 0.72 0.539125
Target:  5'- cGCUCCUC-UCCGGCcUGcUCuucuCCGCCa -3'
miRNA:   3'- -CGAGGAGcAGGCCGuGCcAGu---GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.