miRNA display CGI


Results 41 - 60 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8963 3' -59.9 NC_002512.2 + 24442 0.69 0.737312
Target:  5'- cCUCgUCGUCCGaacGCACGGUgGggCGCCu -3'
miRNA:   3'- cGAGgAGCAGGC---CGUGCCAgUg-GCGG- -5'
8963 3' -59.9 NC_002512.2 + 24570 0.69 0.700257
Target:  5'- cGCUCCUCccucccucccgGUCCGucgaCGCGGggACCGCUg -3'
miRNA:   3'- -CGAGGAG-----------CAGGCc---GUGCCagUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 24783 0.68 0.789498
Target:  5'- cGCUCgg-GUCCgGGCgcgccccccgaggACGGaUCGCCGCCg -3'
miRNA:   3'- -CGAGgagCAGG-CCG-------------UGCC-AGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 27193 0.66 0.853142
Target:  5'- -aUCCUCugcaucUCUGGCAaacucuuCaGUCGCCGCCg -3'
miRNA:   3'- cgAGGAGc-----AGGCCGU-------GcCAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 27978 0.71 0.628026
Target:  5'- gGCggCCgggCGagauUCCGGCGCGGggagacggagaagcCGCCGCCg -3'
miRNA:   3'- -CGa-GGa--GC----AGGCCGUGCCa-------------GUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 29666 0.71 0.605109
Target:  5'- gGCUCCUCGggcUCCGGCuccuCGGgcUCGUCGCg -3'
miRNA:   3'- -CGAGGAGC---AGGCCGu---GCC--AGUGGCGg -5'
8963 3' -59.9 NC_002512.2 + 31149 0.66 0.881628
Target:  5'- -gUCUUCGcggacCUGGCcCGGgagacgCACCGCCu -3'
miRNA:   3'- cgAGGAGCa----GGCCGuGCCa-----GUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 31630 0.66 0.854602
Target:  5'- aGCUCCggcacuacauggaggCcGUCCcggacGGCGCGGgCGCgGCCg -3'
miRNA:   3'- -CGAGGa--------------G-CAGG-----CCGUGCCaGUGgCGG- -5'
8963 3' -59.9 NC_002512.2 + 32057 0.67 0.797958
Target:  5'- cGCcCCUCGaugcaccUCCGGCAgggggGGUCGCCGa- -3'
miRNA:   3'- -CGaGGAGC-------AGGCCGUg----CCAGUGGCgg -5'
8963 3' -59.9 NC_002512.2 + 36442 0.68 0.790349
Target:  5'- cGCUCC-CGccaCCGGCggccGCGGUCG-CGCUc -3'
miRNA:   3'- -CGAGGaGCa--GGCCG----UGCCAGUgGCGG- -5'
8963 3' -59.9 NC_002512.2 + 36782 0.72 0.545632
Target:  5'- cGCagCUC-UCCGGCGCGGagaugaagcggcacUCGCCGCa -3'
miRNA:   3'- -CGagGAGcAGGCCGUGCC--------------AGUGGCGg -5'
8963 3' -59.9 NC_002512.2 + 37320 0.66 0.853873
Target:  5'- cGCUCCgaggccCCGGcCACGGacgCGCUGUCg -3'
miRNA:   3'- -CGAGGagca--GGCC-GUGCCa--GUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 37924 0.67 0.838925
Target:  5'- gGCUCaUCGUaCCGGCacACGGUCGgaGaCCc -3'
miRNA:   3'- -CGAGgAGCA-GGCCG--UGCCAGUggC-GG- -5'
8963 3' -59.9 NC_002512.2 + 38380 0.7 0.633761
Target:  5'- cCUCCUCGUaggaagggagCGcGC-CGGUCGCCGCg -3'
miRNA:   3'- cGAGGAGCAg---------GC-CGuGCCAGUGGCGg -5'
8963 3' -59.9 NC_002512.2 + 38907 0.66 0.881628
Target:  5'- uCUUCUCGgcgaCGGCcCGGagggGCCGCCg -3'
miRNA:   3'- cGAGGAGCag--GCCGuGCCag--UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 40001 0.66 0.846484
Target:  5'- -gUCCUCG-CCGcCGCcGUCuCCGCCg -3'
miRNA:   3'- cgAGGAGCaGGCcGUGcCAGuGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 42776 0.66 0.881628
Target:  5'- uGCcCCUgGUCCacguagGGCuguCGGUCgACgGCCa -3'
miRNA:   3'- -CGaGGAgCAGG------CCGu--GCCAG-UGgCGG- -5'
8963 3' -59.9 NC_002512.2 + 45184 0.66 0.87965
Target:  5'- -gUCCUCGgaggUCucgaccgggaccggCGGCGCGGacgGCCGCCg -3'
miRNA:   3'- cgAGGAGC----AG--------------GCCGUGCCag-UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 45279 0.67 0.815289
Target:  5'- cGCUCgcgCUCGUCucgCGGguCGGacggacCGCCGCCc -3'
miRNA:   3'- -CGAG---GAGCAG---GCCguGCCa-----GUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 47627 0.74 0.458334
Target:  5'- aGUUCCcCGUCCuGGCGCcGUCGCUGUCc -3'
miRNA:   3'- -CGAGGaGCAGG-CCGUGcCAGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.