miRNA display CGI


Results 21 - 40 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8963 3' -59.9 NC_002512.2 + 6164 0.66 0.853873
Target:  5'- uCUCCcggUCGUCCuccccGUGCGaGUCGCCgGCCa -3'
miRNA:   3'- cGAGG---AGCAGGc----CGUGC-CAGUGG-CGG- -5'
8963 3' -59.9 NC_002512.2 + 6447 0.68 0.773089
Target:  5'- gGCgCCgagacaggggUCGgCCGGCACGGUCAUgaCGCa -3'
miRNA:   3'- -CGaGG----------AGCaGGCCGUGCCAGUG--GCGg -5'
8963 3' -59.9 NC_002512.2 + 7547 0.68 0.764291
Target:  5'- cGCUCCUCcUCCuccuGGa--GG-CGCCGCCg -3'
miRNA:   3'- -CGAGGAGcAGG----CCgugCCaGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 7607 0.68 0.773089
Target:  5'- -gUCCUauacgGUCgCGGCGCguuuGGUCACCGUg -3'
miRNA:   3'- cgAGGAg----CAG-GCCGUG----CCAGUGGCGg -5'
8963 3' -59.9 NC_002512.2 + 7742 0.69 0.737312
Target:  5'- cGgUCCUCGggggcggagCCGGgGCGGUagucgGCCGCg -3'
miRNA:   3'- -CgAGGAGCa--------GGCCgUGCCAg----UGGCGg -5'
8963 3' -59.9 NC_002512.2 + 7856 0.67 0.830421
Target:  5'- cGCUCUUCGUgacgcugUCGGUcuugugguacGCGGcCACCGUa -3'
miRNA:   3'- -CGAGGAGCA-------GGCCG----------UGCCaGUGGCGg -5'
8963 3' -59.9 NC_002512.2 + 9369 0.69 0.700257
Target:  5'- aGCUCCUCcagGUCCcgGGCGacgcaGGcCACgGCCu -3'
miRNA:   3'- -CGAGGAG---CAGG--CCGUg----CCaGUGgCGG- -5'
8963 3' -59.9 NC_002512.2 + 10205 0.66 0.861087
Target:  5'- cCUCCUCGUCCucGgGCGG-CG-CGCCc -3'
miRNA:   3'- cGAGGAGCAGGc-CgUGCCaGUgGCGG- -5'
8963 3' -59.9 NC_002512.2 + 10397 0.74 0.440409
Target:  5'- aGCaUCCUCGUCUgacccgccccaggGGCACGaccgcgucGUCGCCGUCg -3'
miRNA:   3'- -CG-AGGAGCAGG-------------CCGUGC--------CAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 10964 0.68 0.790349
Target:  5'- cGC-CCUCGggCCaGGCAgCGGcacgaGCCGCCc -3'
miRNA:   3'- -CGaGGAGCa-GG-CCGU-GCCag---UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 14809 0.73 0.484598
Target:  5'- -gUCCUCGgucccgCCGaCGCGGUagaCGCCGCCg -3'
miRNA:   3'- cgAGGAGCa-----GGCcGUGCCA---GUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 15640 0.67 0.80546
Target:  5'- aCUCCUCGgCCGcGgGCGGcgagccgacgaGCCGCCu -3'
miRNA:   3'- cGAGGAGCaGGC-CgUGCCag---------UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 16984 0.72 0.529877
Target:  5'- cGUUCCUC--CCGGCGCcgacucGGUCcaugGCCGCCg -3'
miRNA:   3'- -CGAGGAGcaGGCCGUG------CCAG----UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 17291 0.77 0.299021
Target:  5'- cCUCCUCGucUCCGGacauCGCGucGUCGCCGCCg -3'
miRNA:   3'- cGAGGAGC--AGGCC----GUGC--CAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 17438 0.68 0.790349
Target:  5'- cCUCCUCG--CGGC--GGUCGCgGCCg -3'
miRNA:   3'- cGAGGAGCagGCCGugCCAGUGgCGG- -5'
8963 3' -59.9 NC_002512.2 + 17851 0.68 0.781778
Target:  5'- aGCUCCUCc-CgGGCGCGGUgcUCGCg -3'
miRNA:   3'- -CGAGGAGcaGgCCGUGCCAguGGCGg -5'
8963 3' -59.9 NC_002512.2 + 18192 0.67 0.823322
Target:  5'- cGCUCCUCGUgCCGcaucacgucgcGCACGGUC-CgGa- -3'
miRNA:   3'- -CGAGGAGCA-GGC-----------CGUGCCAGuGgCgg -5'
8963 3' -59.9 NC_002512.2 + 20265 0.69 0.709614
Target:  5'- -gUCCUCGUCCGGCcGCaGGUCGuacaucUCGUg -3'
miRNA:   3'- cgAGGAGCAGGCCG-UG-CCAGU------GGCGg -5'
8963 3' -59.9 NC_002512.2 + 20369 0.66 0.873614
Target:  5'- uCUCCUCG-CUGuagacguaacaGCGGUCcCCGCCg -3'
miRNA:   3'- cGAGGAGCaGGCcg---------UGCCAGuGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 22094 0.7 0.6814
Target:  5'- ---gCUCGUCCGGC-CGGgagacgaCGCCGUCc -3'
miRNA:   3'- cgagGAGCAGGCCGuGCCa------GUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.