miRNA display CGI


Results 21 - 40 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8963 3' -59.9 NC_002512.2 + 219534 0.66 0.881628
Target:  5'- -gUCUUCGU-CGGCgugcccaccggACGGUCuuCGCCg -3'
miRNA:   3'- cgAGGAGCAgGCCG-----------UGCCAGugGCGG- -5'
8963 3' -59.9 NC_002512.2 + 219262 0.78 0.268014
Target:  5'- gGCUgCUCGUCCGGCAgGGggCGgaCGCCg -3'
miRNA:   3'- -CGAgGAGCAGGCCGUgCCa-GUg-GCGG- -5'
8963 3' -59.9 NC_002512.2 + 218949 0.67 0.807936
Target:  5'- gGCgUCCUCGUcgaccccuccgucgCCGGCugGGagguccggcccggggUCcgcaACCGCCu -3'
miRNA:   3'- -CG-AGGAGCA--------------GGCCGugCC---------------AG----UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 218772 0.69 0.705878
Target:  5'- gGUUCCcCGUCCGGggacgaggccgagGCGGacgaCACCGCCg -3'
miRNA:   3'- -CGAGGaGCAGGCCg------------UGCCa---GUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 218482 0.74 0.449749
Target:  5'- uCUCCUCGUCCcGCG-GGUCGuCCGCg -3'
miRNA:   3'- cGAGGAGCAGGcCGUgCCAGU-GGCGg -5'
8963 3' -59.9 NC_002512.2 + 218414 0.69 0.69085
Target:  5'- -gUCgUCGUCCu-CGCGGUCuCCGCCc -3'
miRNA:   3'- cgAGgAGCAGGccGUGCCAGuGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 217577 0.67 0.823322
Target:  5'- gGCgagCCg-GUCCGGC--GG-CGCCGCCu -3'
miRNA:   3'- -CGa--GGagCAGGCCGugCCaGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 217481 0.69 0.718914
Target:  5'- aGCUCg-CGaucCCGGCGCcGcCGCCGCCg -3'
miRNA:   3'- -CGAGgaGCa--GGCCGUGcCaGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 216416 0.66 0.881628
Target:  5'- cGCagCagGUCCGGgGacgccaGGcUCGCCGCCg -3'
miRNA:   3'- -CGagGagCAGGCCgUg-----CC-AGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 216211 0.68 0.793743
Target:  5'- cGCggccgucgCCUCGUCCgggagcuggagccgcGGCgagACGGUCgucaucaggugcGCCGCCc -3'
miRNA:   3'- -CGa-------GGAGCAGG---------------CCG---UGCCAG------------UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 216174 0.69 0.69085
Target:  5'- gGCUCCcgCGUCuCGGgauCGCGcccgugaUCACCGCCg -3'
miRNA:   3'- -CGAGGa-GCAG-GCC---GUGCc------AGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 215828 0.67 0.823322
Target:  5'- aCUCCccucCCGGC-CGGaacgCGCCGCCg -3'
miRNA:   3'- cGAGGagcaGGCCGuGCCa---GUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 215357 0.69 0.728149
Target:  5'- gGCUCCgUCGacUCCGucGCGCGcuUCGCCGUCg -3'
miRNA:   3'- -CGAGG-AGC--AGGC--CGUGCc-AGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 215206 0.69 0.728149
Target:  5'- cCUCUUCGUCggCGGgGCGGacaaCGCCGUCu -3'
miRNA:   3'- cGAGGAGCAG--GCCgUGCCa---GUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 215055 0.66 0.878987
Target:  5'- aGCUCaccgUCGUCggCGGCgucuaccgcgucgGCGGgaccgaggacuucgUCGCCGCCg -3'
miRNA:   3'- -CGAGg---AGCAG--GCCG-------------UGCC--------------AGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 214761 0.72 0.567177
Target:  5'- aGCgugCCgucgcaGUCCGGCGcCGGUCGCCcuCCg -3'
miRNA:   3'- -CGa--GGag----CAGGCCGU-GCCAGUGGc-GG- -5'
8963 3' -59.9 NC_002512.2 + 214220 0.66 0.861087
Target:  5'- uGCcCCgggaCGUCaggCGGCucguCGGcUCGCCGCCc -3'
miRNA:   3'- -CGaGGa---GCAG---GCCGu---GCC-AGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 214124 0.66 0.853873
Target:  5'- --aCUUCGUCaGGUGCGGccUCAgCGCCu -3'
miRNA:   3'- cgaGGAGCAGgCCGUGCC--AGUgGCGG- -5'
8963 3' -59.9 NC_002512.2 + 213208 0.66 0.874969
Target:  5'- --cCCUgGUCUGGgACcgccgGGUCgugGCCGCCa -3'
miRNA:   3'- cgaGGAgCAGGCCgUG-----CCAG---UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 213172 0.7 0.662401
Target:  5'- aGCUCUgCGUggUCGGCACGaUCggcuACCGCCa -3'
miRNA:   3'- -CGAGGaGCA--GGCCGUGCcAG----UGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.