miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8963 3' -59.9 NC_002512.2 + 229735 0.67 0.815289
Target:  5'- cGCUCCUcCG-CCGGCGCc----CCGCCc -3'
miRNA:   3'- -CGAGGA-GCaGGCCGUGccaguGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 227808 0.68 0.773089
Target:  5'- cGCUCC-CGcCCGGCGUGGaCuCCGCg -3'
miRNA:   3'- -CGAGGaGCaGGCCGUGCCaGuGGCGg -5'
8963 3' -59.9 NC_002512.2 + 227654 0.71 0.61465
Target:  5'- cGC-CCggGUCCGGaggaagaGCGGcggCGCCGCCg -3'
miRNA:   3'- -CGaGGagCAGGCCg------UGCCa--GUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 227060 0.67 0.831202
Target:  5'- cGC-CgUCGUCCGggcccgcgcccGCGCcgGGUC-CCGCCg -3'
miRNA:   3'- -CGaGgAGCAGGC-----------CGUG--CCAGuGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 226416 0.67 0.815289
Target:  5'- cGCgUCCgCGucUCCGGaCGCGGgaccuucgUCGCCGUCa -3'
miRNA:   3'- -CG-AGGaGC--AGGCC-GUGCC--------AGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 225277 0.71 0.586085
Target:  5'- gGCgUCCUCGgcguccgucUCgCGGCccGCGG-CGCCGCCu -3'
miRNA:   3'- -CG-AGGAGC---------AG-GCCG--UGCCaGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 225057 0.72 0.539125
Target:  5'- cGCUCCUCGg-CGGCGCGcaacacGUC-CCGCa -3'
miRNA:   3'- -CGAGGAGCagGCCGUGC------CAGuGGCGg -5'
8963 3' -59.9 NC_002512.2 + 225012 0.66 0.853873
Target:  5'- cGCUCCUCcagCCGGCGCcG-CACgCGgCg -3'
miRNA:   3'- -CGAGGAGca-GGCCGUGcCaGUG-GCgG- -5'
8963 3' -59.9 NC_002512.2 + 224677 0.66 0.86812
Target:  5'- cGCcgCCgUCGgCUGGCccGCGGUC-CUGCCc -3'
miRNA:   3'- -CGa-GG-AGCaGGCCG--UGCCAGuGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 224384 0.74 0.449749
Target:  5'- gGgaCCUCGcgaccCCGGCGCGGaCGCgCGCCa -3'
miRNA:   3'- -CgaGGAGCa----GGCCGUGCCaGUG-GCGG- -5'
8963 3' -59.9 NC_002512.2 + 222989 0.66 0.846484
Target:  5'- cUUCCUCGaccugCCGGggaGCGG-CACgGCCc -3'
miRNA:   3'- cGAGGAGCa----GGCCg--UGCCaGUGgCGG- -5'
8963 3' -59.9 NC_002512.2 + 222909 0.66 0.853873
Target:  5'- gGCUCCUgCGUCUGGaggcuCGG-C-CCGCg -3'
miRNA:   3'- -CGAGGA-GCAGGCCgu---GCCaGuGGCGg -5'
8963 3' -59.9 NC_002512.2 + 222465 0.72 0.53357
Target:  5'- --aCCUCGcgCCGGCccucGCGGUCgucaacguggcggugGCCGCCu -3'
miRNA:   3'- cgaGGAGCa-GGCCG----UGCCAG---------------UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 222339 0.66 0.853873
Target:  5'- gGCgCCUCcaggaggaggagGagCGGCACGGg-GCCGCCu -3'
miRNA:   3'- -CGaGGAG------------CagGCCGUGCCagUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 221664 0.66 0.874969
Target:  5'- cGCUcgaggCCUaCGUCUGGgaCGCGGaCACCcGCCc -3'
miRNA:   3'- -CGA-----GGA-GCAGGCC--GUGCCaGUGG-CGG- -5'
8963 3' -59.9 NC_002512.2 + 221494 0.68 0.781778
Target:  5'- cGCUCggCGUCCuauuuuccuGCGCGG-CGCCGCg -3'
miRNA:   3'- -CGAGgaGCAGGc--------CGUGCCaGUGGCGg -5'
8963 3' -59.9 NC_002512.2 + 220803 0.66 0.853873
Target:  5'- -gUCCUCGaCCcGCucgUGGUC-CCGCCg -3'
miRNA:   3'- cgAGGAGCaGGcCGu--GCCAGuGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 220061 0.69 0.728149
Target:  5'- gGCUCCgccCGagacUCUGGCGCGGauccUCACCuCCu -3'
miRNA:   3'- -CGAGGa--GC----AGGCCGUGCC----AGUGGcGG- -5'
8963 3' -59.9 NC_002512.2 + 219998 0.72 0.55778
Target:  5'- cGCUCCcccUCGcCCGGCG-GGUCgagagGCCGCUc -3'
miRNA:   3'- -CGAGG---AGCaGGCCGUgCCAG-----UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 219584 0.69 0.728149
Target:  5'- gGCUCCUaCGUCCugguGGC-CGacUCGCUGCCc -3'
miRNA:   3'- -CGAGGA-GCAGG----CCGuGCc-AGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.