miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8963 3' -59.9 NC_002512.2 + 209580 1.13 0.001297
Target:  5'- gGCUCCUCGUCCGGCACGGUCACCGCCa -3'
miRNA:   3'- -CGAGGAGCAGGCCGUGCCAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 104937 0.84 0.109736
Target:  5'- cCUCCUCGUCCGGCGuCGGcgCGgCGCCg -3'
miRNA:   3'- cGAGGAGCAGGCCGU-GCCa-GUgGCGG- -5'
8963 3' -59.9 NC_002512.2 + 133632 0.82 0.143322
Target:  5'- cGUcgCCUCGucccuggcggagUCCGGgGCGGUCGCCGCCg -3'
miRNA:   3'- -CGa-GGAGC------------AGGCCgUGCCAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 170145 0.82 0.146804
Target:  5'- uCUCCUCGUCCagcagcagGGCcCGGaUCACCGCCa -3'
miRNA:   3'- cGAGGAGCAGG--------CCGuGCC-AGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 169136 0.81 0.181754
Target:  5'- cGCUCCUCGUCC-GCcCGGcCGCCGCg -3'
miRNA:   3'- -CGAGGAGCAGGcCGuGCCaGUGGCGg -5'
8963 3' -59.9 NC_002512.2 + 2684 0.8 0.190462
Target:  5'- cCUCCUgGUCCGcGCGCGGgagCGCCuGCCg -3'
miRNA:   3'- cGAGGAgCAGGC-CGUGCCa--GUGG-CGG- -5'
8963 3' -59.9 NC_002512.2 + 111103 0.79 0.223872
Target:  5'- aGCUCC-CGcCCGGCgGCGGaggCGCCGCCc -3'
miRNA:   3'- -CGAGGaGCaGGCCG-UGCCa--GUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 149870 0.79 0.229033
Target:  5'- aGCgacgCCUCGUCCGGCucCGGcUGCCGCUg -3'
miRNA:   3'- -CGa---GGAGCAGGCCGu-GCCaGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 128256 0.79 0.234294
Target:  5'- uGCUCCUCGUCCG--ACGGgucCGCCGUCa -3'
miRNA:   3'- -CGAGGAGCAGGCcgUGCCa--GUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 219262 0.78 0.268014
Target:  5'- gGCUgCUCGUCCGGCAgGGggCGgaCGCCg -3'
miRNA:   3'- -CGAgGAGCAGGCCGUgCCa-GUg-GCGG- -5'
8963 3' -59.9 NC_002512.2 + 90919 0.78 0.274001
Target:  5'- gGCggCCgcgaaCGgggCCGGCGCGGcCGCCGCCg -3'
miRNA:   3'- -CGa-GGa----GCa--GGCCGUGCCaGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 3133 0.78 0.274001
Target:  5'- cCUCCgcgUCGUCCGGCcggagccCGGUC-CCGCCg -3'
miRNA:   3'- cGAGG---AGCAGGCCGu------GCCAGuGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 63106 0.77 0.286295
Target:  5'- -gUCCUCGUCCGGgACGGgaggagaGCCGUCc -3'
miRNA:   3'- cgAGGAGCAGGCCgUGCCag-----UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 202113 0.77 0.286295
Target:  5'- cGCgUCCUCGUCagcugguGGCGcCGGUCucgGCCGCCg -3'
miRNA:   3'- -CG-AGGAGCAGg------CCGU-GCCAG---UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 17291 0.77 0.299021
Target:  5'- cCUCCUCGucUCCGGacauCGCGucGUCGCCGCCg -3'
miRNA:   3'- cGAGGAGC--AGGCC----GUGC--CAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 99712 0.77 0.305546
Target:  5'- -gUCCUCGUCCGcGCcgucGCGGgccggccCGCCGCCg -3'
miRNA:   3'- cgAGGAGCAGGC-CG----UGCCa------GUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 178590 0.77 0.305546
Target:  5'- gGCUCUUCaGUCUGGCcgccgccgacuCGGUCGCCGCg -3'
miRNA:   3'- -CGAGGAG-CAGGCCGu----------GCCAGUGGCGg -5'
8963 3' -59.9 NC_002512.2 + 111771 0.77 0.305546
Target:  5'- cCUCCcCGUcagcgauacggCCGGUccgcGCGGUCGCCGCCg -3'
miRNA:   3'- cGAGGaGCA-----------GGCCG----UGCCAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 81779 0.76 0.332733
Target:  5'- cGCcgCCUCGUCuuCGGCGCcGcCGCCGCCg -3'
miRNA:   3'- -CGa-GGAGCAG--GCCGUGcCaGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 152048 0.76 0.346978
Target:  5'- cCUCCgagaaCGgagaCCGGuCGCGGUCAUCGCCg -3'
miRNA:   3'- cGAGGa----GCa---GGCC-GUGCCAGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.