Results 1 - 20 of 334 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8963 | 3' | -59.9 | NC_002512.2 | + | 42776 | 0.66 | 0.881628 |
Target: 5'- uGCcCCUgGUCCacguagGGCuguCGGUCgACgGCCa -3' miRNA: 3'- -CGaGGAgCAGG------CCGu--GCCAG-UGgCGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 216416 | 0.66 | 0.881628 |
Target: 5'- cGCagCagGUCCGGgGacgccaGGcUCGCCGCCg -3' miRNA: 3'- -CGagGagCAGGCCgUg-----CC-AGUGGCGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 38907 | 0.66 | 0.881628 |
Target: 5'- uCUUCUCGgcgaCGGCcCGGagggGCCGCCg -3' miRNA: 3'- cGAGGAGCag--GCCGuGCCag--UGGCGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 128023 | 0.66 | 0.881628 |
Target: 5'- gGCUgCUgCGgCCGGguCGcUCGCUGCCu -3' miRNA: 3'- -CGAgGA-GCaGGCCguGCcAGUGGCGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 193149 | 0.66 | 0.881628 |
Target: 5'- -gUCCUCGUCCuGGC-CGGcgucuggaUCGgCGCg -3' miRNA: 3'- cgAGGAGCAGG-CCGuGCC--------AGUgGCGg -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 219534 | 0.66 | 0.881628 |
Target: 5'- -gUCUUCGU-CGGCgugcccaccggACGGUCuuCGCCg -3' miRNA: 3'- cgAGGAGCAgGCCG-----------UGCCAGugGCGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 187874 | 0.66 | 0.881628 |
Target: 5'- aGCUCCU-GUCU-GUAC-GUCACCGaCCg -3' miRNA: 3'- -CGAGGAgCAGGcCGUGcCAGUGGC-GG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 31149 | 0.66 | 0.881628 |
Target: 5'- -gUCUUCGcggacCUGGCcCGGgagacgCACCGCCu -3' miRNA: 3'- cgAGGAGCa----GGCCGuGCCa-----GUGGCGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 134273 | 0.66 | 0.881628 |
Target: 5'- cUUCgUCGUCCGcGCGgGGUC-CCGg- -3' miRNA: 3'- cGAGgAGCAGGC-CGUgCCAGuGGCgg -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 161900 | 0.66 | 0.881628 |
Target: 5'- uCUCCUCGcgCCGGCccuccuccgGCGGa---CGCCa -3' miRNA: 3'- cGAGGAGCa-GGCCG---------UGCCagugGCGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 150662 | 0.66 | 0.881628 |
Target: 5'- aGCUcgagCCUCGaggUCCgcgGGCgcgGCGGUCGCC-CCg -3' miRNA: 3'- -CGA----GGAGC---AGG---CCG---UGCCAGUGGcGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 80298 | 0.66 | 0.881628 |
Target: 5'- -gUCCUCGUCguCGGCGgucuCGGUCcCCuCCu -3' miRNA: 3'- cgAGGAGCAG--GCCGU----GCCAGuGGcGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 153289 | 0.66 | 0.881628 |
Target: 5'- gGCUCCgcugggUCgGUCCGGguCGGcCGguucCCGCUg -3' miRNA: 3'- -CGAGG------AG-CAGGCCguGCCaGU----GGCGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 151568 | 0.66 | 0.880971 |
Target: 5'- cUUCC-CGagagCCGGCGaggagauCGGUCAUgGCCg -3' miRNA: 3'- cGAGGaGCa---GGCCGU-------GCCAGUGgCGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 45184 | 0.66 | 0.87965 |
Target: 5'- -gUCCUCGgaggUCucgaccgggaccggCGGCGCGGacgGCCGCCg -3' miRNA: 3'- cgAGGAGC----AG--------------GCCGUGCCag-UGGCGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 215055 | 0.66 | 0.878987 |
Target: 5'- aGCUCaccgUCGUCggCGGCgucuaccgcgucgGCGGgaccgaggacuucgUCGCCGCCg -3' miRNA: 3'- -CGAGg---AGCAG--GCCG-------------UGCC--------------AGUGGCGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 81433 | 0.66 | 0.877655 |
Target: 5'- gGCUCCgucccgCGgggggcCCGGCccccguccucccccgGCGGUC-CCGCa -3' miRNA: 3'- -CGAGGa-----GCa-----GGCCG---------------UGCCAGuGGCGg -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 139076 | 0.66 | 0.874969 |
Target: 5'- --aCCUCGUCCGcGUugaagaucgaGCGGaUCGUCGCCc -3' miRNA: 3'- cgaGGAGCAGGC-CG----------UGCC-AGUGGCGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 101609 | 0.66 | 0.874969 |
Target: 5'- gGCggCCgUCGgcCCGGCgccgggacGCGaGUCGCCGCUc -3' miRNA: 3'- -CGa-GG-AGCa-GGCCG--------UGC-CAGUGGCGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 190181 | 0.66 | 0.874969 |
Target: 5'- -aUCCUCGUCgaaCGucccggguucuaGCGCGGUCGggucCUGCCa -3' miRNA: 3'- cgAGGAGCAG---GC------------CGUGCCAGU----GGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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