miRNA display CGI


Results 21 - 40 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8963 3' -59.9 NC_002512.2 + 190181 0.66 0.874969
Target:  5'- -aUCCUCGUCgaaCGucccggguucuaGCGCGGUCGggucCUGCCa -3'
miRNA:   3'- cgAGGAGCAG---GC------------CGUGCCAGU----GGCGG- -5'
8963 3' -59.9 NC_002512.2 + 108733 0.66 0.874969
Target:  5'- cGC-CCUgGgccgcggCCGGCGucuCGGcCGCCGUCg -3'
miRNA:   3'- -CGaGGAgCa------GGCCGU---GCCaGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 213208 0.66 0.874969
Target:  5'- --cCCUgGUCUGGgACcgccgGGUCgugGCCGCCa -3'
miRNA:   3'- cgaGGAgCAGGCCgUG-----CCAG---UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 77570 0.66 0.874969
Target:  5'- cGC-CCacgggCGUCCGaGCcacgccgaGCGGUCccucgcggaucGCCGCCg -3'
miRNA:   3'- -CGaGGa----GCAGGC-CG--------UGCCAG-----------UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 221664 0.66 0.874969
Target:  5'- cGCUcgaggCCUaCGUCUGGgaCGCGGaCACCcGCCc -3'
miRNA:   3'- -CGA-----GGA-GCAGGCC--GUGCCaGUGG-CGG- -5'
8963 3' -59.9 NC_002512.2 + 4431 0.66 0.874969
Target:  5'- aGC-CCUgaaagUGUUCGGUACGGaagccaUCGuCCGCCu -3'
miRNA:   3'- -CGaGGA-----GCAGGCCGUGCC------AGU-GGCGG- -5'
8963 3' -59.9 NC_002512.2 + 75349 0.66 0.874292
Target:  5'- cGCUCCggauuggUCGgcccgaaccgCCGGC-UGaGUCAUCGCCc -3'
miRNA:   3'- -CGAGG-------AGCa---------GGCCGuGC-CAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 20369 0.66 0.873614
Target:  5'- uCUCCUCG-CUGuagacguaacaGCGGUCcCCGCCg -3'
miRNA:   3'- cGAGGAGCaGGCcg---------UGCCAGuGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 96071 0.66 0.872252
Target:  5'- cCUCCUCuuccccccgcacCCGGCGCGaccgucGUCcCCGCCg -3'
miRNA:   3'- cGAGGAGca----------GGCCGUGC------CAGuGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 75421 0.66 0.868813
Target:  5'- cCUCCUCGagggcgggacgUCCGGaucgggGCGGgacguccuguauggaCGCCGCCa -3'
miRNA:   3'- cGAGGAGC-----------AGGCCg-----UGCCa--------------GUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 224677 0.66 0.86812
Target:  5'- cGCcgCCgUCGgCUGGCccGCGGUC-CUGCCc -3'
miRNA:   3'- -CGa-GG-AGCaGGCCG--UGCCAGuGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 102475 0.66 0.86812
Target:  5'- gGCgcgCC-CGUCgCGGUgGCGGUC-CCGCa -3'
miRNA:   3'- -CGa--GGaGCAG-GCCG-UGCCAGuGGCGg -5'
8963 3' -59.9 NC_002512.2 + 80363 0.66 0.86812
Target:  5'- cCUCCUCcuggCCGGCccgcucCGGcCGCgGCCu -3'
miRNA:   3'- cGAGGAGca--GGCCGu-----GCCaGUGgCGG- -5'
8963 3' -59.9 NC_002512.2 + 67784 0.66 0.86812
Target:  5'- gGgUCgUCGgugagCUGGCcucaGCGGUCACCcCCa -3'
miRNA:   3'- -CgAGgAGCa----GGCCG----UGCCAGUGGcGG- -5'
8963 3' -59.9 NC_002512.2 + 154939 0.66 0.86812
Target:  5'- cGCU-CUCGUCCcGUcgcucucccGCGGUCcgcgauCCGCCu -3'
miRNA:   3'- -CGAgGAGCAGGcCG---------UGCCAGu-----GGCGG- -5'
8963 3' -59.9 NC_002512.2 + 114102 0.66 0.86812
Target:  5'- -gUCCcagUCGUCgcaguagcaCGGCACGGcCACCGguCCg -3'
miRNA:   3'- cgAGG---AGCAG---------GCCGUGCCaGUGGC--GG- -5'
8963 3' -59.9 NC_002512.2 + 99489 0.66 0.86812
Target:  5'- gGCUCCUCcgucgucUCCGGCcugcccgUGGUCAUCuCCg -3'
miRNA:   3'- -CGAGGAGc------AGGCCGu------GCCAGUGGcGG- -5'
8963 3' -59.9 NC_002512.2 + 10205 0.66 0.861087
Target:  5'- cCUCCUCGUCCucGgGCGG-CG-CGCCc -3'
miRNA:   3'- cGAGGAGCAGGc-CgUGCCaGUgGCGG- -5'
8963 3' -59.9 NC_002512.2 + 152278 0.66 0.861087
Target:  5'- cGCUCgUCGuUCCGGCggcgauccGCGaGggACCGCUc -3'
miRNA:   3'- -CGAGgAGC-AGGCCG--------UGC-CagUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 134742 0.66 0.861087
Target:  5'- cGgUCCUCGacccgCCGGgGCGG--ACCGUCc -3'
miRNA:   3'- -CgAGGAGCa----GGCCgUGCCagUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.