miRNA display CGI


Results 21 - 40 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8963 3' -59.9 NC_002512.2 + 68896 0.76 0.346978
Target:  5'- --cCCUCG-CCGGgGCGGUCgugcugcugGCCGCCg -3'
miRNA:   3'- cgaGGAGCaGGCCgUGCCAG---------UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 129633 0.75 0.369152
Target:  5'- uCUCCUCccgcucUCCgaGGaCGCGGUCGCCGCCc -3'
miRNA:   3'- cGAGGAGc-----AGG--CC-GUGCCAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 6078 0.75 0.369152
Target:  5'- -gUCgUCGUcCCGGC--GGUCGCCGCCg -3'
miRNA:   3'- cgAGgAGCA-GGCCGugCCAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 77693 0.75 0.38369
Target:  5'- --aCgUCGUCCGGaCGCGGUCaagugaacgagacGCCGCCc -3'
miRNA:   3'- cgaGgAGCAGGCC-GUGCCAG-------------UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 174055 0.75 0.384465
Target:  5'- gGCUCCUCGUCUccuGGa--GGaucuUCACCGCCg -3'
miRNA:   3'- -CGAGGAGCAGG---CCgugCC----AGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 98145 0.75 0.392278
Target:  5'- gGCUCUUCGgacaCCGGUucgGCGGUC-CCGCg -3'
miRNA:   3'- -CGAGGAGCa---GGCCG---UGCCAGuGGCGg -5'
8963 3' -59.9 NC_002512.2 + 106758 0.75 0.392278
Target:  5'- cGCUCCgCGUCCGGCucuCGG-C-CCGCg -3'
miRNA:   3'- -CGAGGaGCAGGCCGu--GCCaGuGGCGg -5'
8963 3' -59.9 NC_002512.2 + 177321 0.75 0.392278
Target:  5'- uGCUCUcugUCGgcCCGGUAUaguuuguucagGGUCACCGCCg -3'
miRNA:   3'- -CGAGG---AGCa-GGCCGUG-----------CCAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 193952 0.75 0.400193
Target:  5'- --aCgUCGUCUGGCGCGaGagGCCGCCg -3'
miRNA:   3'- cgaGgAGCAGGCCGUGC-CagUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 113130 0.75 0.400193
Target:  5'- uCUCCUCGgagaCCGcGCGCGGggCGCCgGCCu -3'
miRNA:   3'- cGAGGAGCa---GGC-CGUGCCa-GUGG-CGG- -5'
8963 3' -59.9 NC_002512.2 + 86623 0.75 0.403388
Target:  5'- gGUUCCUCGUCCucgucGGCgcggugugguggaucGCGGUgGCCGCg -3'
miRNA:   3'- -CGAGGAGCAGG-----CCG---------------UGCCAgUGGCGg -5'
8963 3' -59.9 NC_002512.2 + 98134 0.74 0.42454
Target:  5'- cGCUggUCGUCgCGGCcgcccgccccgGCGGUCGCCGCg -3'
miRNA:   3'- -CGAggAGCAG-GCCG-----------UGCCAGUGGCGg -5'
8963 3' -59.9 NC_002512.2 + 126717 0.74 0.43285
Target:  5'- aGgUCCUCGUCCucgccgGGCGCGG-CGCgUGCCu -3'
miRNA:   3'- -CgAGGAGCAGG------CCGUGCCaGUG-GCGG- -5'
8963 3' -59.9 NC_002512.2 + 80620 0.74 0.43285
Target:  5'- cGCUCCUCGucguacccgUCCGGCcguccgcgGCGG-CGgCGCCg -3'
miRNA:   3'- -CGAGGAGC---------AGGCCG--------UGCCaGUgGCGG- -5'
8963 3' -59.9 NC_002512.2 + 65411 0.74 0.43285
Target:  5'- -gUCCUCGUagcUCGGCggGCGGUCGUCGCCc -3'
miRNA:   3'- cgAGGAGCA---GGCCG--UGCCAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 10397 0.74 0.440409
Target:  5'- aGCaUCCUCGUCUgacccgccccaggGGCACGaccgcgucGUCGCCGUCg -3'
miRNA:   3'- -CG-AGGAGCAGG-------------CCGUGC--------CAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 1641 0.74 0.441254
Target:  5'- cGCcCCcgCGUCCGGCACGuUCGCCcuucccGCCg -3'
miRNA:   3'- -CGaGGa-GCAGGCCGUGCcAGUGG------CGG- -5'
8963 3' -59.9 NC_002512.2 + 112252 0.74 0.441254
Target:  5'- aGUUCCUCGUCuCGaGCACGGUgAagaCGCg -3'
miRNA:   3'- -CGAGGAGCAG-GC-CGUGCCAgUg--GCGg -5'
8963 3' -59.9 NC_002512.2 + 133150 0.74 0.441254
Target:  5'- cGCUCgCUCGUCCGGUucccGCGGgccggC-CCGCg -3'
miRNA:   3'- -CGAG-GAGCAGGCCG----UGCCa----GuGGCGg -5'
8963 3' -59.9 NC_002512.2 + 154439 0.74 0.447191
Target:  5'- -aUCCUUGUCCGGCGCcGUCGacggugcguuccccUCGCCu -3'
miRNA:   3'- cgAGGAGCAGGCCGUGcCAGU--------------GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.