Results 41 - 60 of 334 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8963 | 3' | -59.9 | NC_002512.2 | + | 200633 | 0.66 | 0.861087 |
Target: 5'- cCUCCUCGUCCccgucGGaggACGGaCugCGCg -3' miRNA: 3'- cGAGGAGCAGG-----CCg--UGCCaGugGCGg -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 194319 | 0.66 | 0.861087 |
Target: 5'- cUUCCUCGUggcCCGGgACGGUUGCgugguCGCg -3' miRNA: 3'- cGAGGAGCA---GGCCgUGCCAGUG-----GCGg -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 152278 | 0.66 | 0.861087 |
Target: 5'- cGCUCgUCGuUCCGGCggcgauccGCGaGggACCGCUc -3' miRNA: 3'- -CGAGgAGC-AGGCCG--------UGC-CagUGGCGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 214220 | 0.66 | 0.861087 |
Target: 5'- uGCcCCgggaCGUCaggCGGCucguCGGcUCGCCGCCc -3' miRNA: 3'- -CGaGGa---GCAG---GCCGu---GCC-AGUGGCGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 149403 | 0.66 | 0.861087 |
Target: 5'- gGCUCCUCGaCgGGCcgcgaGGggACCGCg -3' miRNA: 3'- -CGAGGAGCaGgCCGug---CCagUGGCGg -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 110327 | 0.66 | 0.861087 |
Target: 5'- gGCUCCcgCgGUCC-GCcCGGUCcCCGCUc -3' miRNA: 3'- -CGAGGa-G-CAGGcCGuGCCAGuGGCGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 127560 | 0.66 | 0.861087 |
Target: 5'- gGCUCgUCGUCCGGgaggcccgACGG--ACCGUCc -3' miRNA: 3'- -CGAGgAGCAGGCCg-------UGCCagUGGCGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 134742 | 0.66 | 0.861087 |
Target: 5'- cGgUCCUCGacccgCCGGgGCGG--ACCGUCc -3' miRNA: 3'- -CgAGGAGCa----GGCCgUGCCagUGGCGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 49875 | 0.66 | 0.860373 |
Target: 5'- aCUUgUCGUCCGGUGCagcauaaGGgcuCCGCCu -3' miRNA: 3'- cGAGgAGCAGGCCGUG-------CCaguGGCGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 198329 | 0.66 | 0.854602 |
Target: 5'- cGUUCacggCGUCCaGUucguaguugucguaGGUCACCGCCg -3' miRNA: 3'- -CGAGga--GCAGGcCGug------------CCAGUGGCGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 31630 | 0.66 | 0.854602 |
Target: 5'- aGCUCCggcacuacauggaggCcGUCCcggacGGCGCGGgCGCgGCCg -3' miRNA: 3'- -CGAGGa--------------G-CAGG-----CCGUGCCaGUGgCGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 1834 | 0.66 | 0.853873 |
Target: 5'- cGCgCCgcagcCGUCCGcGgGCGucUCGCCGCCg -3' miRNA: 3'- -CGaGGa----GCAGGC-CgUGCc-AGUGGCGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 6164 | 0.66 | 0.853873 |
Target: 5'- uCUCCcggUCGUCCuccccGUGCGaGUCGCCgGCCa -3' miRNA: 3'- cGAGG---AGCAGGc----CGUGC-CAGUGG-CGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 37320 | 0.66 | 0.853873 |
Target: 5'- cGCUCCgaggccCCGGcCACGGacgCGCUGUCg -3' miRNA: 3'- -CGAGGagca--GGCC-GUGCCa--GUGGCGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 220803 | 0.66 | 0.853873 |
Target: 5'- -gUCCUCGaCCcGCucgUGGUC-CCGCCg -3' miRNA: 3'- cgAGGAGCaGGcCGu--GCCAGuGGCGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 205021 | 0.66 | 0.853873 |
Target: 5'- cGCgCCUCGgUCGGgGcCGcGUcCGCCGCCg -3' miRNA: 3'- -CGaGGAGCaGGCCgU-GC-CA-GUGGCGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 104247 | 0.66 | 0.853873 |
Target: 5'- uCUUCaUCGUCaUGGguCguguguGGUCGCCGCCg -3' miRNA: 3'- cGAGG-AGCAG-GCCguG------CCAGUGGCGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 225012 | 0.66 | 0.853873 |
Target: 5'- cGCUCCUCcagCCGGCGCcG-CACgCGgCg -3' miRNA: 3'- -CGAGGAGca-GGCCGUGcCaGUG-GCgG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 146244 | 0.66 | 0.853873 |
Target: 5'- cGCUcugCCUCGaCCGGgACcuGGUgGgCCGCCu -3' miRNA: 3'- -CGA---GGAGCaGGCCgUG--CCAgU-GGCGG- -5' |
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8963 | 3' | -59.9 | NC_002512.2 | + | 178239 | 0.66 | 0.853873 |
Target: 5'- uCUCCggggaCGGCGCGGUCuccggguCCGUCg -3' miRNA: 3'- cGAGGagcagGCCGUGCCAGu------GGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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