miRNA display CGI


Results 41 - 60 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8963 3' -59.9 NC_002512.2 + 10205 0.66 0.861087
Target:  5'- cCUCCUCGUCCucGgGCGG-CG-CGCCc -3'
miRNA:   3'- cGAGGAGCAGGc-CgUGCCaGUgGCGG- -5'
8963 3' -59.9 NC_002512.2 + 127560 0.66 0.861087
Target:  5'- gGCUCgUCGUCCGGgaggcccgACGG--ACCGUCc -3'
miRNA:   3'- -CGAGgAGCAGGCCg-------UGCCagUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 200633 0.66 0.861087
Target:  5'- cCUCCUCGUCCccgucGGaggACGGaCugCGCg -3'
miRNA:   3'- cGAGGAGCAGG-----CCg--UGCCaGugGCGg -5'
8963 3' -59.9 NC_002512.2 + 214220 0.66 0.861087
Target:  5'- uGCcCCgggaCGUCaggCGGCucguCGGcUCGCCGCCc -3'
miRNA:   3'- -CGaGGa---GCAG---GCCGu---GCC-AGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 211490 0.66 0.861087
Target:  5'- --aCCUCGUCCaGCAgGaGcUCcuguGCCGCCa -3'
miRNA:   3'- cgaGGAGCAGGcCGUgC-C-AG----UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 186904 0.66 0.861087
Target:  5'- gGC-CCUCGUCgGGaaccaGCGcGUCuACCuGCCc -3'
miRNA:   3'- -CGaGGAGCAGgCCg----UGC-CAG-UGG-CGG- -5'
8963 3' -59.9 NC_002512.2 + 149403 0.66 0.861087
Target:  5'- gGCUCCUCGaCgGGCcgcgaGGggACCGCg -3'
miRNA:   3'- -CGAGGAGCaGgCCGug---CCagUGGCGg -5'
8963 3' -59.9 NC_002512.2 + 194319 0.66 0.861087
Target:  5'- cUUCCUCGUggcCCGGgACGGUUGCgugguCGCg -3'
miRNA:   3'- cGAGGAGCA---GGCCgUGCCAGUG-----GCGg -5'
8963 3' -59.9 NC_002512.2 + 49875 0.66 0.860373
Target:  5'- aCUUgUCGUCCGGUGCagcauaaGGgcuCCGCCu -3'
miRNA:   3'- cGAGgAGCAGGCCGUG-------CCaguGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 198329 0.66 0.854602
Target:  5'- cGUUCacggCGUCCaGUucguaguugucguaGGUCACCGCCg -3'
miRNA:   3'- -CGAGga--GCAGGcCGug------------CCAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 31630 0.66 0.854602
Target:  5'- aGCUCCggcacuacauggaggCcGUCCcggacGGCGCGGgCGCgGCCg -3'
miRNA:   3'- -CGAGGa--------------G-CAGG-----CCGUGCCaGUGgCGG- -5'
8963 3' -59.9 NC_002512.2 + 178239 0.66 0.853873
Target:  5'- uCUCCggggaCGGCGCGGUCuccggguCCGUCg -3'
miRNA:   3'- cGAGGagcagGCCGUGCCAGu------GGCGG- -5'
8963 3' -59.9 NC_002512.2 + 220803 0.66 0.853873
Target:  5'- -gUCCUCGaCCcGCucgUGGUC-CCGCCg -3'
miRNA:   3'- cgAGGAGCaGGcCGu--GCCAGuGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 146244 0.66 0.853873
Target:  5'- cGCUcugCCUCGaCCGGgACcuGGUgGgCCGCCu -3'
miRNA:   3'- -CGA---GGAGCaGGCCgUG--CCAgU-GGCGG- -5'
8963 3' -59.9 NC_002512.2 + 225012 0.66 0.853873
Target:  5'- cGCUCCUCcagCCGGCGCcG-CACgCGgCg -3'
miRNA:   3'- -CGAGGAGca-GGCCGUGcCaGUG-GCgG- -5'
8963 3' -59.9 NC_002512.2 + 104247 0.66 0.853873
Target:  5'- uCUUCaUCGUCaUGGguCguguguGGUCGCCGCCg -3'
miRNA:   3'- cGAGG-AGCAG-GCCguG------CCAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 37320 0.66 0.853873
Target:  5'- cGCUCCgaggccCCGGcCACGGacgCGCUGUCg -3'
miRNA:   3'- -CGAGGagca--GGCC-GUGCCa--GUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 205021 0.66 0.853873
Target:  5'- cGCgCCUCGgUCGGgGcCGcGUcCGCCGCCg -3'
miRNA:   3'- -CGaGGAGCaGGCCgU-GC-CA-GUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 6164 0.66 0.853873
Target:  5'- uCUCCcggUCGUCCuccccGUGCGaGUCGCCgGCCa -3'
miRNA:   3'- cGAGG---AGCAGGc----CGUGC-CAGUGG-CGG- -5'
8963 3' -59.9 NC_002512.2 + 1834 0.66 0.853873
Target:  5'- cGCgCCgcagcCGUCCGcGgGCGucUCGCCGCCg -3'
miRNA:   3'- -CGaGGa----GCAGGC-CgUGCc-AGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.