miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8963 3' -59.9 NC_002512.2 + 1834 0.66 0.853873
Target:  5'- cGCgCCgcagcCGUCCGcGgGCGucUCGCCGCCg -3'
miRNA:   3'- -CGaGGa----GCAGGC-CgUGCc-AGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 37320 0.66 0.853873
Target:  5'- cGCUCCgaggccCCGGcCACGGacgCGCUGUCg -3'
miRNA:   3'- -CGAGGagca--GGCC-GUGCCa--GUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 80363 0.66 0.86812
Target:  5'- cCUCCUCcuggCCGGCccgcucCGGcCGCgGCCu -3'
miRNA:   3'- cGAGGAGca--GGCCGu-----GCCaGUGgCGG- -5'
8963 3' -59.9 NC_002512.2 + 6164 0.66 0.853873
Target:  5'- uCUCCcggUCGUCCuccccGUGCGaGUCGCCgGCCa -3'
miRNA:   3'- cGAGG---AGCAGGc----CGUGC-CAGUGG-CGG- -5'
8963 3' -59.9 NC_002512.2 + 27193 0.66 0.853142
Target:  5'- -aUCCUCugcaucUCUGGCAaacucuuCaGUCGCCGCCg -3'
miRNA:   3'- cgAGGAGc-----AGGCCGU-------GcCAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 31630 0.66 0.854602
Target:  5'- aGCUCCggcacuacauggaggCcGUCCcggacGGCGCGGgCGCgGCCg -3'
miRNA:   3'- -CGAGGa--------------G-CAGG-----CCGUGCCaGUGgCGG- -5'
8963 3' -59.9 NC_002512.2 + 127560 0.66 0.861087
Target:  5'- gGCUCgUCGUCCGGgaggcccgACGG--ACCGUCc -3'
miRNA:   3'- -CGAGgAGCAGGCCg-------UGCCagUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 10205 0.66 0.861087
Target:  5'- cCUCCUCGUCCucGgGCGG-CG-CGCCc -3'
miRNA:   3'- cGAGGAGCAGGc-CgUGCCaGUgGCGG- -5'
8963 3' -59.9 NC_002512.2 + 152278 0.66 0.861087
Target:  5'- cGCUCgUCGuUCCGGCggcgauccGCGaGggACCGCUc -3'
miRNA:   3'- -CGAGgAGC-AGGCCG--------UGC-CagUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 104247 0.66 0.853873
Target:  5'- uCUUCaUCGUCaUGGguCguguguGGUCGCCGCCg -3'
miRNA:   3'- cGAGG-AGCAG-GCCguG------CCAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 134742 0.66 0.861087
Target:  5'- cGgUCCUCGacccgCCGGgGCGG--ACCGUCc -3'
miRNA:   3'- -CgAGGAGCa----GGCCgUGCCagUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 80153 0.66 0.846484
Target:  5'- cCUCgUCGUCCuccuCGCuGUCGCCGUCg -3'
miRNA:   3'- cGAGgAGCAGGcc--GUGcCAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 20369 0.66 0.873614
Target:  5'- uCUCCUCG-CUGuagacguaacaGCGGUCcCCGCCg -3'
miRNA:   3'- cGAGGAGCaGGCcg---------UGCCAGuGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 75421 0.66 0.868813
Target:  5'- cCUCCUCGagggcgggacgUCCGGaucgggGCGGgacguccuguauggaCGCCGCCa -3'
miRNA:   3'- cGAGGAGC-----------AGGCCg-----UGCCa--------------GUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 40001 0.66 0.846484
Target:  5'- -gUCCUCG-CCGcCGCcGUCuCCGCCg -3'
miRNA:   3'- cgAGGAGCaGGCcGUGcCAGuGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 110327 0.66 0.861087
Target:  5'- gGCUCCcgCgGUCC-GCcCGGUCcCCGCUc -3'
miRNA:   3'- -CGAGGa-G-CAGGcCGuGCCAGuGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 99489 0.66 0.86812
Target:  5'- gGCUCCUCcgucgucUCCGGCcugcccgUGGUCAUCuCCg -3'
miRNA:   3'- -CGAGGAGc------AGGCCGu------GCCAGUGGcGG- -5'
8963 3' -59.9 NC_002512.2 + 75349 0.66 0.874292
Target:  5'- cGCUCCggauuggUCGgcccgaaccgCCGGC-UGaGUCAUCGCCc -3'
miRNA:   3'- -CGAGG-------AGCa---------GGCCGuGC-CAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 67784 0.66 0.86812
Target:  5'- gGgUCgUCGgugagCUGGCcucaGCGGUCACCcCCa -3'
miRNA:   3'- -CgAGgAGCa----GGCCG----UGCCAGUGGcGG- -5'
8963 3' -59.9 NC_002512.2 + 99187 0.66 0.851674
Target:  5'- uGgUCCUCGcCCuGauccuccagaucucCGCGGcCGCCGCCg -3'
miRNA:   3'- -CgAGGAGCaGGcC--------------GUGCCaGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.