miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8963 3' -59.9 NC_002512.2 + 332 0.67 0.815289
Target:  5'- cGCUCCUcCG-CCGGCGCc----CCGCCc -3'
miRNA:   3'- -CGAGGA-GCaGGCCGUGccaguGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 1286 0.71 0.586085
Target:  5'- aCUCCUCcaccugGUCCGGCGCc--UGCCGCCg -3'
miRNA:   3'- cGAGGAG------CAGGCCGUGccaGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 1641 0.74 0.441254
Target:  5'- cGCcCCcgCGUCCGGCACGuUCGCCcuucccGCCg -3'
miRNA:   3'- -CGaGGa-GCAGGCCGUGCcAGUGG------CGG- -5'
8963 3' -59.9 NC_002512.2 + 1834 0.66 0.853873
Target:  5'- cGCgCCgcagcCGUCCGcGgGCGucUCGCCGCCg -3'
miRNA:   3'- -CGaGGa----GCAGGC-CgUGCc-AGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 1886 0.69 0.709614
Target:  5'- cGCgUCC-CGUCCGGCucCGGcccucggcccUCGgCGCCg -3'
miRNA:   3'- -CG-AGGaGCAGGCCGu-GCC----------AGUgGCGG- -5'
8963 3' -59.9 NC_002512.2 + 1949 0.7 0.675713
Target:  5'- cGCUCCcccgccUCGUCCgccggcgucggaggcGGCGCGuccGUCuCCGCCu -3'
miRNA:   3'- -CGAGG------AGCAGG---------------CCGUGC---CAGuGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 2204 0.72 0.55778
Target:  5'- -gUCgUCGUCuCGGUcgccgGCGG-CGCCGCCg -3'
miRNA:   3'- cgAGgAGCAG-GCCG-----UGCCaGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 2311 0.67 0.823322
Target:  5'- gGCUCUgcugCG-CCGGCGguccggaggccuCGGUCGcggacCCGCCc -3'
miRNA:   3'- -CGAGGa---GCaGGCCGU------------GCCAGU-----GGCGG- -5'
8963 3' -59.9 NC_002512.2 + 2567 0.67 0.831202
Target:  5'- cUUCCUCGggcgCCGGCGC-GUCuCCcCCa -3'
miRNA:   3'- cGAGGAGCa---GGCCGUGcCAGuGGcGG- -5'
8963 3' -59.9 NC_002512.2 + 2684 0.8 0.190462
Target:  5'- cCUCCUgGUCCGcGCGCGGgagCGCCuGCCg -3'
miRNA:   3'- cGAGGAgCAGGC-CGUGCCa--GUGG-CGG- -5'
8963 3' -59.9 NC_002512.2 + 3133 0.78 0.274001
Target:  5'- cCUCCgcgUCGUCCGGCcggagccCGGUC-CCGCCg -3'
miRNA:   3'- cGAGG---AGCAGGCCGu------GCCAGuGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 3649 0.67 0.815289
Target:  5'- cCUCCUCcUCCGGCcCccUCGCgGCCg -3'
miRNA:   3'- cGAGGAGcAGGCCGuGccAGUGgCGG- -5'
8963 3' -59.9 NC_002512.2 + 3961 0.67 0.823322
Target:  5'- aCUCCUCGUggguaggauggaCUGGCAgGGUucCACCaCCu -3'
miRNA:   3'- cGAGGAGCA------------GGCCGUgCCA--GUGGcGG- -5'
8963 3' -59.9 NC_002512.2 + 3991 0.66 0.874969
Target:  5'- cGCUCCUCGggaGGCGgGGggCGUCGCa -3'
miRNA:   3'- -CGAGGAGCaggCCGUgCCa-GUGGCGg -5'
8963 3' -59.9 NC_002512.2 + 4431 0.66 0.874969
Target:  5'- aGC-CCUgaaagUGUUCGGUACGGaagccaUCGuCCGCCu -3'
miRNA:   3'- -CGaGGA-----GCAGGCCGUGCC------AGU-GGCGG- -5'
8963 3' -59.9 NC_002512.2 + 4778 0.67 0.831202
Target:  5'- uGCgCCUCGagcugcgCCGGUugcgACGGUUGCUGCg -3'
miRNA:   3'- -CGaGGAGCa------GGCCG----UGCCAGUGGCGg -5'
8963 3' -59.9 NC_002512.2 + 5541 0.7 0.633761
Target:  5'- cGC-CCgCGaccCCGGCGCGG-CGCCGCg -3'
miRNA:   3'- -CGaGGaGCa--GGCCGUGCCaGUGGCGg -5'
8963 3' -59.9 NC_002512.2 + 5749 0.71 0.595585
Target:  5'- cGCguccgCCUC--CCGGCGCGGgucCACgGCCg -3'
miRNA:   3'- -CGa----GGAGcaGGCCGUGCCa--GUGgCGG- -5'
8963 3' -59.9 NC_002512.2 + 5964 0.71 0.61465
Target:  5'- cCUCCcCGUCCGGCuCGaccucUCGCCGCg -3'
miRNA:   3'- cGAGGaGCAGGCCGuGCc----AGUGGCGg -5'
8963 3' -59.9 NC_002512.2 + 6078 0.75 0.369152
Target:  5'- -gUCgUCGUcCCGGC--GGUCGCCGCCg -3'
miRNA:   3'- cgAGgAGCA-GGCCGugCCAGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.