miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8963 3' -59.9 NC_002512.2 + 47627 0.74 0.458334
Target:  5'- aGUUCCcCGUCCuGGCGCcGUCGCUGUCc -3'
miRNA:   3'- -CGAGGaGCAGG-CCGUGcCAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 106758 0.75 0.392278
Target:  5'- cGCUCCgCGUCCGGCucuCGG-C-CCGCg -3'
miRNA:   3'- -CGAGGaGCAGGCCGu--GCCaGuGGCGg -5'
8963 3' -59.9 NC_002512.2 + 86623 0.75 0.403388
Target:  5'- gGUUCCUCGUCCucgucGGCgcggugugguggaucGCGGUgGCCGCg -3'
miRNA:   3'- -CGAGGAGCAGG-----CCG---------------UGCCAgUGGCGg -5'
8963 3' -59.9 NC_002512.2 + 65411 0.74 0.43285
Target:  5'- -gUCCUCGUagcUCGGCggGCGGUCGUCGCCc -3'
miRNA:   3'- cgAGGAGCA---GGCCG--UGCCAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 80620 0.74 0.43285
Target:  5'- cGCUCCUCGucguacccgUCCGGCcguccgcgGCGG-CGgCGCCg -3'
miRNA:   3'- -CGAGGAGC---------AGGCCG--------UGCCaGUgGCGG- -5'
8963 3' -59.9 NC_002512.2 + 10397 0.74 0.440409
Target:  5'- aGCaUCCUCGUCUgacccgccccaggGGCACGaccgcgucGUCGCCGUCg -3'
miRNA:   3'- -CG-AGGAGCAGG-------------CCGUGC--------CAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 1641 0.74 0.441254
Target:  5'- cGCcCCcgCGUCCGGCACGuUCGCCcuucccGCCg -3'
miRNA:   3'- -CGaGGa-GCAGGCCGUGCcAGUGG------CGG- -5'
8963 3' -59.9 NC_002512.2 + 133150 0.74 0.441254
Target:  5'- cGCUCgCUCGUCCGGUucccGCGGgccggC-CCGCg -3'
miRNA:   3'- -CGAG-GAGCAGGCCG----UGCCa----GuGGCGg -5'
8963 3' -59.9 NC_002512.2 + 154439 0.74 0.447191
Target:  5'- -aUCCUUGUCCGGCGCcGUCGacggugcguuccccUCGCCu -3'
miRNA:   3'- cgAGGAGCAGGCCGUGcCAGU--------------GGCGG- -5'
8963 3' -59.9 NC_002512.2 + 98145 0.75 0.392278
Target:  5'- gGCUCUUCGgacaCCGGUucgGCGGUC-CCGCg -3'
miRNA:   3'- -CGAGGAGCa---GGCCG---UGCCAGuGGCGg -5'
8963 3' -59.9 NC_002512.2 + 6078 0.75 0.369152
Target:  5'- -gUCgUCGUcCCGGC--GGUCGCCGCCg -3'
miRNA:   3'- cgAGgAGCA-GGCCGugCCAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 68896 0.76 0.346978
Target:  5'- --cCCUCG-CCGGgGCGGUCgugcugcugGCCGCCg -3'
miRNA:   3'- cgaGGAGCaGGCCgUGCCAG---------UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 133632 0.82 0.143322
Target:  5'- cGUcgCCUCGucccuggcggagUCCGGgGCGGUCGCCGCCg -3'
miRNA:   3'- -CGa-GGAGC------------AGGCCgUGCCAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 2684 0.8 0.190462
Target:  5'- cCUCCUgGUCCGcGCGCGGgagCGCCuGCCg -3'
miRNA:   3'- cGAGGAgCAGGC-CGUGCCa--GUGG-CGG- -5'
8963 3' -59.9 NC_002512.2 + 128256 0.79 0.234294
Target:  5'- uGCUCCUCGUCCG--ACGGgucCGCCGUCa -3'
miRNA:   3'- -CGAGGAGCAGGCcgUGCCa--GUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 3133 0.78 0.274001
Target:  5'- cCUCCgcgUCGUCCGGCcggagccCGGUC-CCGCCg -3'
miRNA:   3'- cGAGG---AGCAGGCCGu------GCCAGuGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 90919 0.78 0.274001
Target:  5'- gGCggCCgcgaaCGgggCCGGCGCGGcCGCCGCCg -3'
miRNA:   3'- -CGa-GGa----GCa--GGCCGUGCCaGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 63106 0.77 0.286295
Target:  5'- -gUCCUCGUCCGGgACGGgaggagaGCCGUCc -3'
miRNA:   3'- cgAGGAGCAGGCCgUGCCag-----UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 17291 0.77 0.299021
Target:  5'- cCUCCUCGucUCCGGacauCGCGucGUCGCCGCCg -3'
miRNA:   3'- cGAGGAGC--AGGCC----GUGC--CAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 81779 0.76 0.332733
Target:  5'- cGCcgCCUCGUCuuCGGCGCcGcCGCCGCCg -3'
miRNA:   3'- -CGa-GGAGCAG--GCCGUGcCaGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.