miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8963 3' -59.9 NC_002512.2 + 193149 0.66 0.881628
Target:  5'- -gUCCUCGUCCuGGC-CGGcgucuggaUCGgCGCg -3'
miRNA:   3'- cgAGGAGCAGG-CCGuGCC--------AGUgGCGg -5'
8963 3' -59.9 NC_002512.2 + 154939 0.66 0.86812
Target:  5'- cGCU-CUCGUCCcGUcgcucucccGCGGUCcgcgauCCGCCu -3'
miRNA:   3'- -CGAgGAGCAGGcCG---------UGCCAGu-----GGCGG- -5'
8963 3' -59.9 NC_002512.2 + 200633 0.66 0.861087
Target:  5'- cCUCCUCGUCCccgucGGaggACGGaCugCGCg -3'
miRNA:   3'- cGAGGAGCAGG-----CCg--UGCCaGugGCGg -5'
8963 3' -59.9 NC_002512.2 + 209580 1.13 0.001297
Target:  5'- gGCUCCUCGUCCGGCACGGUCACCGCCa -3'
miRNA:   3'- -CGAGGAGCAGGCCGUGCCAGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 187874 0.66 0.881628
Target:  5'- aGCUCCU-GUCU-GUAC-GUCACCGaCCg -3'
miRNA:   3'- -CGAGGAgCAGGcCGUGcCAGUGGC-GG- -5'
8963 3' -59.9 NC_002512.2 + 153289 0.66 0.881628
Target:  5'- gGCUCCgcugggUCgGUCCGGguCGGcCGguucCCGCUg -3'
miRNA:   3'- -CGAGG------AG-CAGGCCguGCCaGU----GGCGG- -5'
8963 3' -59.9 NC_002512.2 + 151568 0.66 0.880971
Target:  5'- cUUCC-CGagagCCGGCGaggagauCGGUCAUgGCCg -3'
miRNA:   3'- cGAGGaGCa---GGCCGU-------GCCAGUGgCGG- -5'
8963 3' -59.9 NC_002512.2 + 215055 0.66 0.878987
Target:  5'- aGCUCaccgUCGUCggCGGCgucuaccgcgucgGCGGgaccgaggacuucgUCGCCGCCg -3'
miRNA:   3'- -CGAGg---AGCAG--GCCG-------------UGCC--------------AGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 4431 0.66 0.874969
Target:  5'- aGC-CCUgaaagUGUUCGGUACGGaagccaUCGuCCGCCu -3'
miRNA:   3'- -CGaGGA-----GCAGGCCGUGCC------AGU-GGCGG- -5'
8963 3' -59.9 NC_002512.2 + 224677 0.66 0.86812
Target:  5'- cGCcgCCgUCGgCUGGCccGCGGUC-CUGCCc -3'
miRNA:   3'- -CGa-GG-AGCaGGCCG--UGCCAGuGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 96071 0.66 0.872252
Target:  5'- cCUCCUCuuccccccgcacCCGGCGCGaccgucGUCcCCGCCg -3'
miRNA:   3'- cGAGGAGca----------GGCCGUGC------CAGuGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 221664 0.66 0.874969
Target:  5'- cGCUcgaggCCUaCGUCUGGgaCGCGGaCACCcGCCc -3'
miRNA:   3'- -CGA-----GGA-GCAGGCC--GUGCCaGUGG-CGG- -5'
8963 3' -59.9 NC_002512.2 + 219534 0.66 0.881628
Target:  5'- -gUCUUCGU-CGGCgugcccaccggACGGUCuuCGCCg -3'
miRNA:   3'- cgAGGAGCAgGCCG-----------UGCCAGugGCGG- -5'
8963 3' -59.9 NC_002512.2 + 114102 0.66 0.86812
Target:  5'- -gUCCcagUCGUCgcaguagcaCGGCACGGcCACCGguCCg -3'
miRNA:   3'- cgAGG---AGCAG---------GCCGUGCCaGUGGC--GG- -5'
8963 3' -59.9 NC_002512.2 + 161900 0.66 0.881628
Target:  5'- uCUCCUCGcgCCGGCccuccuccgGCGGa---CGCCa -3'
miRNA:   3'- cGAGGAGCa-GGCCG---------UGCCagugGCGG- -5'
8963 3' -59.9 NC_002512.2 + 77570 0.66 0.874969
Target:  5'- cGC-CCacgggCGUCCGaGCcacgccgaGCGGUCccucgcggaucGCCGCCg -3'
miRNA:   3'- -CGaGGa----GCAGGC-CG--------UGCCAG-----------UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 102475 0.66 0.86812
Target:  5'- gGCgcgCC-CGUCgCGGUgGCGGUC-CCGCa -3'
miRNA:   3'- -CGa--GGaGCAG-GCCG-UGCCAGuGGCGg -5'
8963 3' -59.9 NC_002512.2 + 214220 0.66 0.861087
Target:  5'- uGCcCCgggaCGUCaggCGGCucguCGGcUCGCCGCCc -3'
miRNA:   3'- -CGaGGa---GCAG---GCCGu---GCC-AGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 216416 0.66 0.881628
Target:  5'- cGCagCagGUCCGGgGacgccaGGcUCGCCGCCg -3'
miRNA:   3'- -CGagGagCAGGCCgUg-----CC-AGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 150662 0.66 0.881628
Target:  5'- aGCUcgagCCUCGaggUCCgcgGGCgcgGCGGUCGCC-CCg -3'
miRNA:   3'- -CGA----GGAGC---AGG---CCG---UGCCAGUGGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.