miRNA display CGI


Results 21 - 40 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8963 3' -59.9 NC_002512.2 + 193149 0.66 0.881628
Target:  5'- -gUCCUCGUCCuGGC-CGGcgucuggaUCGgCGCg -3'
miRNA:   3'- cgAGGAGCAGG-CCGuGCC--------AGUgGCGg -5'
8963 3' -59.9 NC_002512.2 + 225012 0.66 0.853873
Target:  5'- cGCUCCUCcagCCGGCGCcG-CACgCGgCg -3'
miRNA:   3'- -CGAGGAGca-GGCCGUGcCaGUG-GCgG- -5'
8963 3' -59.9 NC_002512.2 + 146244 0.66 0.853873
Target:  5'- cGCUcugCCUCGaCCGGgACcuGGUgGgCCGCCu -3'
miRNA:   3'- -CGA---GGAGCaGGCCgUG--CCAgU-GGCGG- -5'
8963 3' -59.9 NC_002512.2 + 186904 0.66 0.861087
Target:  5'- gGC-CCUCGUCgGGaaccaGCGcGUCuACCuGCCc -3'
miRNA:   3'- -CGaGGAGCAGgCCg----UGC-CAG-UGG-CGG- -5'
8963 3' -59.9 NC_002512.2 + 213208 0.66 0.874969
Target:  5'- --cCCUgGUCUGGgACcgccgGGUCgugGCCGCCa -3'
miRNA:   3'- cgaGGAgCAGGCCgUG-----CCAG---UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 37924 0.67 0.838925
Target:  5'- gGCUCaUCGUaCCGGCacACGGUCGgaGaCCc -3'
miRNA:   3'- -CGAGgAGCA-GGCCG--UGCCAGUggC-GG- -5'
8963 3' -59.9 NC_002512.2 + 222339 0.66 0.853873
Target:  5'- gGCgCCUCcaggaggaggagGagCGGCACGGg-GCCGCCu -3'
miRNA:   3'- -CGaGGAG------------CagGCCGUGCCagUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 215055 0.66 0.878987
Target:  5'- aGCUCaccgUCGUCggCGGCgucuaccgcgucgGCGGgaccgaggacuucgUCGCCGCCg -3'
miRNA:   3'- -CGAGg---AGCAG--GCCG-------------UGCC--------------AGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 49875 0.66 0.860373
Target:  5'- aCUUgUCGUCCGGUGCagcauaaGGgcuCCGCCu -3'
miRNA:   3'- cGAGgAGCAGGCCGUG-------CCaguGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 194319 0.66 0.861087
Target:  5'- cUUCCUCGUggcCCGGgACGGUUGCgugguCGCg -3'
miRNA:   3'- cGAGGAGCA---GGCCgUGCCAGUG-----GCGg -5'
8963 3' -59.9 NC_002512.2 + 150662 0.66 0.881628
Target:  5'- aGCUcgagCCUCGaggUCCgcgGGCgcgGCGGUCGCC-CCg -3'
miRNA:   3'- -CGA----GGAGC---AGG---CCG---UGCCAGUGGcGG- -5'
8963 3' -59.9 NC_002512.2 + 153289 0.66 0.881628
Target:  5'- gGCUCCgcugggUCgGUCCGGguCGGcCGguucCCGCUg -3'
miRNA:   3'- -CGAGG------AG-CAGGCCguGCCaGU----GGCGG- -5'
8963 3' -59.9 NC_002512.2 + 75884 0.67 0.838925
Target:  5'- cCUCCUCcugCCGGCGuCGcucuuucuguuuGcCGCCGCCg -3'
miRNA:   3'- cGAGGAGca-GGCCGU-GC------------CaGUGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 210674 0.67 0.838925
Target:  5'- aCUCCUgGUCCaagcgcaacGGCAaGG-CGCCGCg -3'
miRNA:   3'- cGAGGAgCAGG---------CCGUgCCaGUGGCGg -5'
8963 3' -59.9 NC_002512.2 + 178239 0.66 0.853873
Target:  5'- uCUCCggggaCGGCGCGGUCuccggguCCGUCg -3'
miRNA:   3'- cGAGGagcagGCCGUGCCAGu------GGCGG- -5'
8963 3' -59.9 NC_002512.2 + 102475 0.66 0.86812
Target:  5'- gGCgcgCC-CGUCgCGGUgGCGGUC-CCGCa -3'
miRNA:   3'- -CGa--GGaGCAG-GCCG-UGCCAGuGGCGg -5'
8963 3' -59.9 NC_002512.2 + 96071 0.66 0.872252
Target:  5'- cCUCCUCuuccccccgcacCCGGCGCGaccgucGUCcCCGCCg -3'
miRNA:   3'- cGAGGAGca----------GGCCGUGC------CAGuGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 187874 0.66 0.881628
Target:  5'- aGCUCCU-GUCU-GUAC-GUCACCGaCCg -3'
miRNA:   3'- -CGAGGAgCAGGcCGUGcCAGUGGC-GG- -5'
8963 3' -59.9 NC_002512.2 + 211490 0.66 0.861087
Target:  5'- --aCCUCGUCCaGCAgGaGcUCcuguGCCGCCa -3'
miRNA:   3'- cgaGGAGCAGGcCGUgC-C-AG----UGGCGG- -5'
8963 3' -59.9 NC_002512.2 + 198329 0.66 0.854602
Target:  5'- cGUUCacggCGUCCaGUucguaguugucguaGGUCACCGCCg -3'
miRNA:   3'- -CGAGga--GCAGGcCGug------------CCAGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.