miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8965 3' -54.1 NC_002512.2 + 99618 0.66 0.979042
Target:  5'- cGCgCUCGUCGCggUCgu---CGCCCUCg -3'
miRNA:   3'- -CG-GAGUAGCGgaAGaugcuGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 126464 0.66 0.979042
Target:  5'- cGCCUUGuUCGCCgucgUCgucGCGuCGCCCg- -3'
miRNA:   3'- -CGGAGU-AGCGGa---AGa--UGCuGUGGGag -5'
8965 3' -54.1 NC_002512.2 + 180428 0.66 0.979042
Target:  5'- uCCUCGgugacggCGCCccggGCGGCGCCCgUCa -3'
miRNA:   3'- cGGAGUa------GCGGaagaUGCUGUGGG-AG- -5'
8965 3' -54.1 NC_002512.2 + 104935 0.66 0.976732
Target:  5'- gGCCUCcUCGuCCggcgUCggcGCGGCGCcggCCUCg -3'
miRNA:   3'- -CGGAGuAGC-GGa---AGa--UGCUGUG---GGAG- -5'
8965 3' -54.1 NC_002512.2 + 124835 0.66 0.976732
Target:  5'- cGCCgcCGUCGCCga--GCGAgGCCCg- -3'
miRNA:   3'- -CGGa-GUAGCGGaagaUGCUgUGGGag -5'
8965 3' -54.1 NC_002512.2 + 5864 0.66 0.976732
Target:  5'- cGCCcgCcgUGUCUUCUGCcucGGCAUUCUCg -3'
miRNA:   3'- -CGGa-GuaGCGGAAGAUG---CUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 125950 0.66 0.976732
Target:  5'- uCCUCuucCGCCccUCgACGACacACCCUCg -3'
miRNA:   3'- cGGAGua-GCGGa-AGaUGCUG--UGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 197573 0.66 0.976492
Target:  5'- gGCUUCGUCaccgacguggucuGCCa-CUACGAgcCGCCCUCc -3'
miRNA:   3'- -CGGAGUAG-------------CGGaaGAUGCU--GUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 148691 0.66 0.976249
Target:  5'- cCCUCGUCGCCgcuUCgcccggaucguCGGCGCCaUCa -3'
miRNA:   3'- cGGAGUAGCGGa--AGau---------GCUGUGGgAG- -5'
8965 3' -54.1 NC_002512.2 + 142575 0.67 0.974241
Target:  5'- aCCUCAUCGUCU---GCGugGCcgCCUCc -3'
miRNA:   3'- cGGAGUAGCGGAagaUGCugUG--GGAG- -5'
8965 3' -54.1 NC_002512.2 + 126576 0.67 0.974241
Target:  5'- gGCCUCGgcCGuCCUgucCUACGACGgccggcUCCUCa -3'
miRNA:   3'- -CGGAGUa-GC-GGAa--GAUGCUGU------GGGAG- -5'
8965 3' -54.1 NC_002512.2 + 204405 0.67 0.974241
Target:  5'- cCCUCgAUCGCCUcaaccUCauacgGCGGCGCCUg- -3'
miRNA:   3'- cGGAG-UAGCGGA-----AGa----UGCUGUGGGag -5'
8965 3' -54.1 NC_002512.2 + 204011 0.67 0.974241
Target:  5'- cGCCUCuUCGgCUUCgugcgggccgACGGCgaACUCUCg -3'
miRNA:   3'- -CGGAGuAGCgGAAGa---------UGCUG--UGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 34872 0.67 0.973982
Target:  5'- cGCCgUCGUCGCCgccgCcGgGACcgccgucGCCCUCu -3'
miRNA:   3'- -CGG-AGUAGCGGaa--GaUgCUG-------UGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 86162 0.67 0.971283
Target:  5'- cGCCUcCGagGCCcugCUGCGggagcuggaggucGCGCCCUCc -3'
miRNA:   3'- -CGGA-GUagCGGaa-GAUGC-------------UGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 94023 0.67 0.968984
Target:  5'- gGCCUCGUcCGCCagCUccucggcggugacgGCGACcgggaagggcgcgggACCCUCc -3'
miRNA:   3'- -CGGAGUA-GCGGaaGA--------------UGCUG---------------UGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 187312 0.67 0.968687
Target:  5'- cGCCgc-UCGCCUc--GCGGCGCCCg- -3'
miRNA:   3'- -CGGaguAGCGGAagaUGCUGUGGGag -5'
8965 3' -54.1 NC_002512.2 + 130429 0.67 0.968687
Target:  5'- gGCCa-GUCG-CUUCUACGACGUCUUCg -3'
miRNA:   3'- -CGGagUAGCgGAAGAUGCUGUGGGAG- -5'
8965 3' -54.1 NC_002512.2 + 2007 0.67 0.965612
Target:  5'- cGCCcgCGUCGCCUgagcCGGCACCa-- -3'
miRNA:   3'- -CGGa-GUAGCGGAagauGCUGUGGgag -5'
8965 3' -54.1 NC_002512.2 + 106914 0.67 0.965612
Target:  5'- cGCCUCuuccUCGUCcUCgucgaGCGACACCUcgUCg -3'
miRNA:   3'- -CGGAGu---AGCGGaAGa----UGCUGUGGG--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.